GgaINT0059917 @ galGal3
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12865812-12866155:-
Coord C1 exon
chr5:12866113-12866155
Coord A exon
chr5:12866026-12866112
Coord C2 exon
chr5:12865812-12866025
Length
87 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AAAAATCACTTACAATTTAGGCT
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTATCCCTGAAATGTGGCGATGATGCTAGCAAGAGCTCATCTG
Seq A exon
GTGAGTAGAGTTCTTCAGTTTTATTAAAAGTGGCTTCAATGTGGCTATTTTAAGGAAGATATGCATTAAAAATCACTTACAATTTAG
Seq C2 exon
GCTCACTGCAGCCTGAAAGTCCTCTGAAAGTGAGTATAGACCTGTTGACAAGAGCAGTTGAGGCCCTTGTGCGACTCCACATGAATTCATGTAGCATGAGTTCTGCAACAGTTTCTCCAGAAGATAAGACTACCAAGGAAGCATGGACTGCCACAGAACATCTCCAGTTCACAATATTTGCTGCACATGGAATTTTTCCTGATTGGGTATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCGATGATGCTAGCAAG
R:
CAGTCCATGCTTCCTTGGTAGT
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]