GgaINT0060211 @ galGal3
Intron Retention
Gene
ENSGALG00000009282 | C14orf43
Description
NA
Coordinates
chr5:28308735-28309610:+
Coord C1 exon
chr5:28308735-28309080
Coord A exon
chr5:28309081-28309543
Coord C2 exon
chr5:28309544-28309610
Length
463 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTTCTTTCTTTGCCTTGCAGACA
3' ss Score
10.63
Exon sequences
Seq C1 exon
CATGAACATGCTGTTCCAAAGGATGAAACAGAGGGCTTTGCCCGGAAACCAAAGCAGCGCCCAAGACCTGAGCCACTCTTCATACCACCAAAAGCTGGCACCTTTATTGCACCACCTGTTTATTCTAATATTACACCGTATCAGAGCCACTTACGGTCACCTGTCCGTCTGGCAGACCATCCTTCTGACAGGAACTTTGAACTACCTCCTTACACTCCTCCACCAATTCTTAGTCCAGTGAGAGAAGGATCTGGGCTGTATTTTAATGCTATCCTCTCTTCAAGTGGTCATCCAGTTCCACCTCCAATGACTCCTAAAAGTTCCCACAGAACTCTGCTTAGATCAA
Seq A exon
GTAAGTTCCACTTTTTCTTTCCCTTCTTCCCTTCTTGGCTAATTTGTGCTTAGGAACTGTGGAGCACTAGAAGGATAATCATGACTTCTGGAGTATGTGAAAATGAGATTTCTTGGTGATAAAGTCTGGGTAGCTAGGATGAGGGAACTGCAGTGCTCCTTCCATCAGTCCATAAATGTTAAGAGGCATTCACAAGTAATCTCCAACACCCCCTACTGACATTCTCAGGAATGGAAAAGTCAGTTCATTTTCTATAATAGCCTATTATTATCTTGGGCTGAGTGGGCAGTAAGTAGTTAATAGTAAGATGTAAAAGCTGAGTTCTTCTTGGACATCCTAAACTCATTTAGCATATGGGTACCTGTTTTAAAATATGGATACCTCTGACAGATTTATAAGCCGTGTGAAGAAAATATCTCATGAGAAGATGGTGAGTCTGAGCAGTTCTTTCTTTGCCTTGCAG
Seq C2 exon
ACAGTTCAGAGGTTACCCCTCCTGTTCTTTCTGTGGTGGGAGAAGCCACCCCGGTCAGCATAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282:ENSGALT00000015102:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.793 A=NA C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCCGGAAACCAAAGCAG
R:
GGCTTCTCCCACCACAGAAAG
Band lengths:
357-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]