RnoINT0054397 @ rn6
Intron Retention
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107644353-107646515:-
Coord C1 exon
chr6:107646170-107646515
Coord A exon
chr6:107644420-107646169
Coord C2 exon
chr6:107644353-107644419
Length
1750 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
AGTGTGCTCTTTGCCCATAGATA
3' ss Score
9.82
Exon sequences
Seq C1 exon
GCCGAAGACCTGAACGCCAAGTTGGAGGGAGAACCTTCTATGCGGAAACCAAAGCAGCGGCCACGGCCGGAGCCTCTCATCATCCCCACCAAGGCGGGCACTTTCATTGCCCCTCCTGTCTACTCCAACATCACCCCCTACCAGAGCCACCTGCGTTCTCCTGTGCGCCTTGCTGACCACCCCTCTGAGAGGAGCTTCGAGCTGCCCCCTTACACACCACCCCCCATTCTCAGCCCCGTTCGGGAAGGCTCTGGCCTCTACTTCAATGCCATCCTGTCAACCAGCAACGTCCCGGCCCCTCCTCCTATCACGCCAAAGAGTGCCCATAGGACCCTGCTCCGCTCTA
Seq A exon
GTGAGTGACCCTGGTGGTTGTGGCAGTGGGGATCATAGAAACAGTTCTGTCTGTGGGTTAAAGGGGGCTGGAGGCTGGAGGAAGAACTCGGCTCTCTCCCCTGAAGGGGTGGGGTGATGCGTGGTCAGCCCTCCTGTGTGGAGTCTGATCCCCGCTCCCTGTCCACTCTTCACGGTCACATCCACAAGTCCAACTGCTCAGACCTCAGTTCCTTCAGTATTCAGCAAGGATCAGGATTCGATTAGTCATGCTTGGCTGATGATGGAATTGCCGATATTCAGCTGATCCACAAACAGCAGTTCCCTACCATTCGATCTAATAGCTACCCCCTCAGACTGTGGTGGGAGTCACGGAAATTAGCATTGTTCATAGTAGGTGGCTGACCTGGTCTCCTGGGCATGCTGAGACATTCTGGTTAAGAACGGGCCCCGGTGTTGTGAGGCTTAAAAATGTCCATTTTACGAAGGGGTTCTCATTTGGAAAGTGGGATCACCTGATCCCTTCCTTATAGGGGAAGGCAAAGGTGCAGGCTTCTCCCAGTTAACCTCTGACCCCAGATATCATCACCCATGGTGTAGTTCTCTGGTGCCTCCTAGTGTCTGTGGGTGGAAATTGCCCTATGTTGGCAAGCAGTAGGTTTTACAAGCGCTTACCTGGGAAGTTTCCCTCCCTGCCTCAGTTTGTGCTAGAAATCAAGGACCGGAGCCAACAAAGACGTCAGAGTGCCCAATAAGTGTTTACTGAACATTGGGTGTAAAACCTCGAACTGGATCCTGTGCAGGCTTCAAGAATTGTACCGGCACCGTTATCTAGTCTAAAGAAAGTGCAGGGAAACTGGGGAGACAGAAAAGCAGAGGCTCCTAGCAGTGTGAGACCAGCACACGGTGAATGGTGAACGTGGCTGCCACCAAGTTTCTAACCTGCGGAAGCCTGCAGAGATAAGGAAAGAATTTGGGAGAGGGTGGAGTCAGGCTGAACTCCTGCAGAGAGGGAGGGGCAGGCACTTCAGGCGTGGAGTGGGGCTGAGCAGGGATCGAGGGCCACAAGGTAGGGGTGAGAGCCTGGGCTGTAGCGGGTGGAGGGGTACAGACCACAGGCCATGGGAACTTCCTGAAACAGCTGAGGGATTCAGACTTGGTCTCATGCTGCAGGGGACAGCAACAGAGGTTGTGTGTGGTTTTTGTTTTTGTTTTTTGTTTTTTTTGATTAAGGGAGTGTTTTCATCCCATCAGGCGTTAAGATTAAGTTGGAGAAAAGTGAGGCAAAAAAAAAAAAATCCAGAGAGACTACAAAGGATAATTATGAAGAGACTGTTACCATCTTCCTGGTGTGCTTCCTTTCAGGCTCTTTGATAGAATAAAACAAAAGTAAAACAGAGTTTTCTGCTGAAGTGTGTGGAGAGGGAGCTCCTGGAAGCTGGGGCTGGGCTTTGATGGTCGTGCTAACAGTGATAGCTGATAGTTATGCAGTGCTGGTCTCTTATTTAATTCAAAAGTCTCATTAGCCCCAGGAGACAGAAAGAAATAACCCCCTTTGCAGATGTGAAAACTGAGGTACTCACAAGTTTAATCCAGGGCCGGAGTTGCACAGTCTTCGAGTTGCAGAGCAAGGACAGAGGGTGTCTGAGTTCCAAGTGTACTCAGTGAGTCACCACTGTGACTCTTGTATGCAGGACAGCCGTATATGAGAGAAATGTTTTCCTGAAGGAAGGAAGGAAGGGGCCATTTACCAGTGTGCTCTTTGCCCATAG
Seq C2 exon
ATAGTTCTGAAGTCACCCCGCCCGTCCTCTCTGTGATGGGGGAGGCCACCCCTGTGAGCATCGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653:ENSRNOT00000014158:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=NA C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCGGAAACCAAAGCAGC
R:
CTCCCCCATCACAGAGAGGAC
Band lengths:
353-2103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]