RnoEX0031746 @ rn6
Exon Skipping
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107644353-107656074:-
Coord C1 exon
chr6:107655775-107656074
Coord A exon
chr6:107646170-107646515
Coord C2 exon
chr6:107644353-107644419
Length
346 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTTTCCTTCTCCAGGCC
3' ss Score
12.27
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GATGCCAATGGCTCTGAGGAGAAGCGGAAAAGCGTGCTGGCCTCAACTGCCAAGTGTGGTGTGGAGTTTTCTGAGCCCGCCTCAGCTGCCAAGAGAGCTCGGGAGGAGAGTGGGATGGTGCCCCTCATCATCCCCGTGTCTGTTCCTGTGAGGACCGTGGGCCCCACCGAGGTGGCCCAAGTTGGAGGTTCTGATGAGGATGGGAAGGGTCTTGAGCAGTTCCCCACTGACCACAAGCCGTCGGTCATCGTAACCCGCAGGAGGTCTACCCGAGTGCCCGGGACAGATACTGCAGCTCAG
Seq A exon
GCCGAAGACCTGAACGCCAAGTTGGAGGGAGAACCTTCTATGCGGAAACCAAAGCAGCGGCCACGGCCGGAGCCTCTCATCATCCCCACCAAGGCGGGCACTTTCATTGCCCCTCCTGTCTACTCCAACATCACCCCCTACCAGAGCCACCTGCGTTCTCCTGTGCGCCTTGCTGACCACCCCTCTGAGAGGAGCTTCGAGCTGCCCCCTTACACACCACCCCCCATTCTCAGCCCCGTTCGGGAAGGCTCTGGCCTCTACTTCAATGCCATCCTGTCAACCAGCAACGTCCCGGCCCCTCCTCCTATCACGCCAAAGAGTGCCCATAGGACCCTGCTCCGCTCTA
Seq C2 exon
ATAGTTCTGAAGTCACCCCGCCCGTCCTCTCTGTGATGGGGGAGGCCACCCCTGTGAGCATCGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653-'11-8,'11-7,13-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.813 A=0.659 C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGGCTCTGAGGAGAAG
R:
CCTCCCCCATCACAGAGAGG
Band lengths:
342-688
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003307; ELM sequence: RPRPEPLII; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]