GgaEX1022247 @ galGal3
Exon Skipping
Gene
ENSGALG00000009282 | C14orf43
Description
NA
Coordinates
chr5:28307445-28309610:+
Coord C1 exon
chr5:28307445-28307765
Coord A exon
chr5:28308735-28309080
Coord C2 exon
chr5:28309544-28309610
Length
346 bp
Sequences
Splice sites
3' ss Seq
ATATAACCTTTTTCTAATAGCAT
3' ss Score
5.19
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAATCAGATACTTCAGAAGACAAGAAAAGCGTGCTGATAGCAGCTCCAGGACCTACAGCTGCTAAAAGTGTTGTGGAATTTGCCAGTTCTTCACCAGCTCCCAAAAAAGCACGGGAGGATAGCAGCCTTGTGCCTCTTATCATTCCTGTATCTGTGCCAGTGAGAAAAATTGACTTGCAAAATCTTGAAAAAGAGAAGTCTGAGGATGGGAAACTCCAGAGAGGCCAAACAAATGATCGAACTCCTTGTGAACGCAAGCCTTCTGTGATAGTCACTCGGAGGCGATCTAATCGTAACACTAACATGGAAACCTCAAATCAG
Seq A exon
CATGAACATGCTGTTCCAAAGGATGAAACAGAGGGCTTTGCCCGGAAACCAAAGCAGCGCCCAAGACCTGAGCCACTCTTCATACCACCAAAAGCTGGCACCTTTATTGCACCACCTGTTTATTCTAATATTACACCGTATCAGAGCCACTTACGGTCACCTGTCCGTCTGGCAGACCATCCTTCTGACAGGAACTTTGAACTACCTCCTTACACTCCTCCACCAATTCTTAGTCCAGTGAGAGAAGGATCTGGGCTGTATTTTAATGCTATCCTCTCTTCAAGTGGTCATCCAGTTCCACCTCCAATGACTCCTAAAAGTTCCCACAGAACTCTGCTTAGATCAA
Seq C2 exon
ACAGTTCAGAGGTTACCCCTCCTGTTCTTTCTGTGGTGGGAGAAGCCACCCCGGTCAGCATAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=0.793 C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATAGCAGCTCCAGGACCT
R:
GTTCTATGCTGACCGGGGTG
Band lengths:
354-700
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003307; ELM sequence: RPRPEPLII; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]