DreEX6055561 @ danRer10
Exon Skipping
Gene
ENSDARG00000053864 | elmsan1b
Description
ELM2 and Myb/SANT-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-131121-13]
Coordinates
chr17:37372358-37376798:+
Coord C1 exon
chr17:37372358-37372657
Coord A exon
chr17:37375371-37375731
Coord C2 exon
chr17:37376732-37376798
Length
361 bp
Sequences
Splice sites
3' ss Seq
ACATCTAATTTCTTCTGCAGAAT
3' ss Score
9.76
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CAAGAGCCACACAGGCCTTGGAGTCCGCCTGTTGTCCCGACAGGTCCTGGTCGAGGGGCAGCTGAGGTGGATCAGGTGAGTGCCAAGCGGCCCAGAGACGACAGCCTCATGCCATTGGTCATTCCAGTCTCTGTACCAGTGAGGCAGACTGACTCCTCATCCCCGGATCATGAGCAGGCTTCCCTCTCCGTTAGCTGGCCTTTGCGGCCTTCTGACATGAGCTGCTCCAATTACCAGCCCTCTGTGATTGTTACACGACGGCGCTCGCTGAGGAACTCCCCATCTGAGAGCACGGGCCAG
Seq A exon
AATGGCGGAGCAGAGAGCGGGAGTGAAGCTGACAGCAAATCAGCCAAAGCCAAACGACGTCCTCGTCCAGAACCGCTCTTTATCCCCCCACCCAAACTTGGCACTTTCATCGCCCCACCGGCCTACTCCAGCATCACACCCTTCCAGAGTCACCTACGATCTCCTGTCCGATTGGTGGACAACCCCCTCAACATGCCGCCTTACACTCCTCCGCCCATCCTCAGCCCGGTTCGAGAGGGTTCGGGTCTTTACTTCTCCACGTTCTTGTCGGCTGCGGCTGCTGCAGCTGCTGCTGCTAATAATCAGGTGCTGCCCCCGCCTGCCACTCCCAAATCAGCCACCCGCAGCCTTCTGCGCTCAA
Seq C2 exon
ACAGCAGCGATATTACCCCTCCAGTTCTCTCAGCTATAAGTGAAGCTACACCTGTCAGCATTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053864-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.945 A=0.587 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAGTCCGCCTGTTGTC
R:
GGCTCAATGCTGACAGGTGTA
Band lengths:
351-712
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003307; ELM sequence: RPRPEPLII; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]