BtaEX6054961 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85526289-85534030:-
Coord C1 exon
chr10:85533734-85534030
Coord A exon
chr10:85528311-85528656
Coord C2 exon
chr10:85526289-85526355
Length
346 bp
Sequences
Splice sites
3' ss Seq
GGTTCTGTTTCCTTCTCCAGCCT
3' ss Score
7.7
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GATGCCAGTGGCTCTGAGGAGAAGAGAAAAAGTGTGTTGGCTTCAACTACCAAGTGTGGGGTGGAGTTTTCTGAGCCTGCCTTAGCCAAGCGAGCACGAGAGGACAGCGGGATGGTACCCCTCATCATCCCAGTGTCTGTGCCTGTGCGGGCAGTGGACCCAACTGAGGCAGCTCAAGCTGGAGGTGTTGATGAGGATGGAAAGGGTCCCGAGCAGCACCCTGCTGAACACAAGCCGTCAGTCATTGTCACCCGCCGGCGGTCCACCCGTATCCCTGGGACTGATGCCCCAGCTCAG
Seq A exon
CCTGAGGACATGAACGTTAAGTTGGAGGGGGAGCCTTCAGTGCGGAAACCAAAGCAGCGGCCGAGACCTGAGCCCCTGATCATCCCCACCAAGGCGGGCACTTTCATCGCCCCTCCCGTCTACTCCAACATCACTCCCTACCAGAGCCACCTGCGCTCCCCCGTCCGCCTCGCCGACCACCCGTCCGAGCGGAGCTTTGAGCTGCCCCCCTACACACCACCCCCCATCCTCAGCCCCGTGCGGGAAGGCTCCGGACTCTATTTCAATGCCATCATGTCGACCAGCAGCATCCCAGCCCCTCCTCCCATCACGCCAAAGAGTGCCCATCGCACCCTGCTCCGGTCTA
Seq C2 exon
ATAGCGCCGAAGTCACCCCGCCTGTGCTCTCTGTGATGGGGGAGGCCACCCCAGTGAGCATCGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272-'5-2,'5-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=0.698 C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGGCTCTGAGGAGAAGA
R:
CTCGATGCTCACTGGGGTGG
Band lengths:
358-704
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003307; ELM sequence: RPRPEPLII; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]