MmuEX6082036 @ mm9
Exon Skipping
Gene
ENSMUSG00000042507 | C130039O16Rik
Description
RIKEN cDNA C130039O16 gene [Source:MGI Symbol;Acc:MGI:2685106]
Coordinates
chr12:85501429-85512709:-
Coord C1 exon
chr12:85512410-85512709
Coord A exon
chr12:85503206-85503551
Coord C2 exon
chr12:85501429-85501495
Length
346 bp
Sequences
Splice sites
3' ss Seq
CATTTTGTTTTCTTCTCCAGGCT
3' ss Score
10.67
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GATGCCAATGGCTCTGAGGAGAAGCGGAAAAGCGTGTTGGCCACAACTTCCAGGTGTGGCGTGGAGTTTTCCGAGCCTGCCTTAGCCGCCAAGAGAGCTCGGGAGGAGAGTGGGATGGTACCCCTCATCATTCCTGTGTCTGTTCCCGTGAGGACTGTGGGTCCAACTGAGGTGGCCCAAGTCGGAGGTGCTGACGAGGATGGGACTGGTCTTGAGCAGTACCCCACCGAGCACAAGCCGTCAGTCATCGTGACCCGCAGGCGGTCCACCCGAGTTCCCGGGACAGATGCTGCAGCTCAG
Seq A exon
GCTGAAGACCTGAACGTCAAGTTGGAAGGGGAGCCTTCCATGCGGAAACCAAAGCAGCGGCCGCGGCCGGAGCCCCTCATCATCCCCACCAAGGCGGGCACTTTCATCGCCCCTCCTGTCTACTCCAACATCACCCCTTACCAGAGCCACCTGCGCTCTCCCGTGCGCCTTGCTGACCACCCCTCTGAGCGGAGCTTTGAGCCCCCCCCTTACACACCACCCCCCATTCTCAGCCCCGTCCGGGAAGGCTCTGGCCTCTACTTCAATGCCATCATATCAACCAGCAACATCCCGGCCCCTCCTCCTATCACGCCAAAGAGTGCCCATCGAACCCTGCTCCGCTCTA
Seq C2 exon
ATAGCTCTGAAGTCACCCCGCCTGTCCTCTCTGTGATGGGGGAGGCCACCCCTGTGAGCATCGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042507-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=0.655 C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGGCTCTGAGGAGAAG
R:
CCTCCCCCATCACAGAGAGG
Band lengths:
342-688
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003307; ELM sequence: RPRPEPLII; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: