DreEX6045143 @ danRer10
Exon Skipping
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25993008-25997354:-
Coord C1 exon
chr20:25997130-25997354
Coord A exon
chr20:25994628-25994940
Coord C2 exon
chr20:25993008-25993074
Length
313 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCCATTTGATTCAGGGT
3' ss Score
9.32
5' ss Seq
CAAGTGTGT
5' ss Score
3.84
Exon sequences
Seq C1 exon
CGAGAGGACGTTAACCCTGGTAGACCAGCTGGTATGGTGCCTTTAGTCATCCCAGTCTCTGTTCCAGTTCGGAAAGGTCAAACCCAAATGGAAGTGCCAGGCAACTGGCCACAGCTGGATAATGTTCGGCATACCTCAGGAAGTTCCCAGCCTGATCGCAAACCCTCGGTTATTGTTGCACGCCGGCAGTCATTGAAGAACTCAGCATCTGAGAATTTCATCCAG
Seq A exon
GGTAAAGGGCAAGATGACAAATCAAAGCGTCGTCCGCGACCTGAGCCCCTGGTCATTCCTCAACCGTGCACTTTCATCGCCCCTTCCATCTATTCCAGCATCAGTGCCTACCAGAGTAACCTGCGTTCTCCATTGCGTCTGCCGGACCATGCCATCATGATCCCGCCATACACTCCTCCGCCCATTCTGTCACCTGTGCGGGAAGGATCGGGCCTGTACTTCTCTACTGTCCTCTCTTCTATGGCAGCAGGCAGTCAAGTTTTGCCACCACCACCCACACCCCGCAGCGCCTCGCGAAGCCTACTGCGCTCAA
Seq C2 exon
GCAGTTCTGACATCACTCCTCCTGCTCCTCCACTGATTGGAGAAGCAACTCCTGTCAGCCTTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.476 C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGGACGTTAACCCTGGT
R:
CAAGGCTGACAGGAGTTGCTT
Band lengths:
288-601
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: filter binding. ELM ID: ELMI003307; ELM sequence: RPRPEPLII; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]