GgaINT0060918 @ galGal3
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55309854-55311201:+
Coord C1 exon
chrZ:55309854-55309982
Coord A exon
chrZ:55309983-55310964
Coord C2 exon
chrZ:55310965-55311201
Length
982 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CATTTCTTTTTGTATTTCAGCTG
3' ss Score
9.95
Exon sequences
Seq C1 exon
AATGCCCTCAAGGTACATATGGGTATGGATGTCGGCAGATATGTGACTGTCTGAACAACTCAACCTGTGACCACATCACAGGAACGTGTTACTGCAGCCCAGGCTGGAAGGGGGCCAGGTGTGATCAAG
Seq A exon
GTAGAGACTAGATGCAGTCAAATTACTACAGATGTTTGCTGTAAAACTTAGTCAACCTATTAAATGCCACATATGTGTCAGCCACTAAATTATTTTTTATGTTTTTAATATGTTTCAGTAGTCTGTTATTGAATTATATATATATTCAATAGATTTGTAAGTATTAAATGCCTCAGTGATAGTTTATTGGATCAAATCACTCAGGTGCAGATCGCATGAAATGTTTTACAGTGCTGCGCTGTCCAAAGCTGCTGATAGAGCATATATTTACTCTGTACTTTTGCCTACAAGATGTTCTCACTTTTTCAGCCCTTTCTATGGATCACAGAGTCATAGCAATGGCTTGGGTTGGATGGGATCTCAAGGATCATCAAGTTCCAACTCCTCTTCCACAGGCAGGATTGCCAGCAGCTAGATCATCTACTAGACCAGGCTGCCCAGGGCCCCATCCAACCTGGCCTTAAACACCTCCAGAGACGGGGCATCCACAGCCTGTCTGGACAGCCTGTTCTAGCACCTTACCACTCTCTCTGTAAAAAACTTCCCCGACATCTAATCTAAACCTCCCCTTCTTTAGTTTAAAACCATTCCCCCTTGTCCTGTCACTATCTACCCATGTAAAAAGCTGATTTCCCTCATGTTTATAAACTCCCTTTAAATACTGGAAGGCCACGATGAGATTTCCCCACAGACTTTTCTTCCCTGGGCTGAACAAACCCAGTTCATTCACCCTGTCTTCATAGGAGAGGTACTCCAGCCCTTGGATCATCTTTGTGGCCCTCCTCTGGACCCTCTCCAAAAAGATTAATGCTTTTCCTGAAGGCTAAGGTTGTTTTTTGCATTGGTTTTGGACGTGGTTCTATTTTGGCACTAAAAAATACAGTTAAAATGATCAGATACAGAAGTGAAATACCATCTTCTGCTCCTGACACATAAGCCTCTGAATTTATGCAGTGTATTTTCATTTCTTTTTGTATTTCAG
Seq C2 exon
CTGGCGTAATTATAGTGGGAAACCTGAACAGCTTAAGCCGTACCAGTACTGCCATCCCTGCTGACTCTTACCAGATAGGGGCTATAGCAGGCATCATCATTCTTGTCTTGATTGTGCTCTTCCTGCTAGTGCTGTTCATTATTTACAGACATAAGCAAAAAGGGAAAGAAACAAACATGCCTGCAGTGACCTATACTCCTGCGATGAGGGTCATCAATGCTGATTACACCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF0005319=Laminin_EGF=PU(78.4=65.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(18.9=8.8),PF061436=Baculo_11_kDa=WD(100=51.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTCAAGGTACATATGGGT
R:
GATGACCCTCATCGCAGGAGT
Band lengths:
342-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]