GgaINT0061322 @ galGal3
Intron Retention
Gene
ENSGALG00000015082 | F1NZS7_CHICK
Description
NA
Coordinates
chrZ:33523752-33523982:-
Coord C1 exon
chrZ:33523977-33523982
Coord A exon
chrZ:33523884-33523976
Coord C2 exon
chrZ:33523752-33523883
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TTATTTTTTTCTACTGTTAGCTC
3' ss Score
6.55
Exon sequences
Seq C1 exon
GTTAAG
Seq A exon
GTGAAGCCAGCAGTTCAACGCTAATTTTCTCAGGAAATGTCATGTCAGAAGCTTCAACTAAATCATGTATTGTTTATTTTTTTCTACTGTTAG
Seq C2 exon
CTCAACATCTCTTTCCCAGCCACTGGCTGCCAGAAGCTTATTGAAGTGGATGATGAGCGCAAGCTGAGAACATTCTATGAGAAGCGAATGGCCACGGAGGTTGCGGCTGATTCTCTTGGCGAGGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015082:ENSGALT00000038258:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PU(0.8=50.0)
A:
NA
C2:
PF0109214=Ribosomal_S6e=PU(34.4=97.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]