MmuINT0137022 @ mm9
Intron Retention
Gene
ENSMUSG00000028495 | Rps6
Description
ribosomal protein S6 [Source:MGI Symbol;Acc:MGI:98159]
Coordinates
chr4:86502632-86503271:-
Coord C1 exon
chr4:86503225-86503271
Coord A exon
chr4:86502764-86503224
Coord C2 exon
chr4:86502632-86502763
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GTCCCCCTTTAAAACTGTAGCTG
3' ss Score
5.87
Exon sequences
Seq C1 exon
CTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAAGATGAAG
Seq A exon
GTAGGCGTCCCCGGCCAGGGCCGAGTGAGGCCGCCCGAGCCCGAGCGTGCGGCACGGCCTCGGTCCCAGGCTCGCATAAGTCCCGCACTAAGTGGAGAAGGATCCGAGGCGGGAGGGAACTCGTTTTGGCGGCCCTGGGACGCTCTGGGAGAGCGGATGGCGGGCGATTGCAGCGCCGCCGCGGTGGACGTAGCGCCATAGCGGCGCCCGGCTCCGGGCCCGGCACGCGCGGTCCCGAAGCCCCGCTCGCGGCTGGCAGCCTTGCGGCTCTCGAGCCCTCGCCACTCTGCTAGCGGAGGTCTTGAGGGTCGCCCGGCGTCCTCAGCATCCCACAGAGCTCCTGTAAAATGTCCCGTGGATGCGGCGCTTTGCCGGGCGTGGGATCCGAGCCTCGGACGCCCTGCGTTGTCGGCCCGGCTTGGGTCCCTAAGGTTCTCTCTTGTCCCCCTTTAAAACTGTAG
Seq C2 exon
CTGAACATCTCCTTCCCCGCCACCGGCTGTCAGAAGCTCATCGAGGTGGATGACGAGCGCAAGCTCCGCACCTTCTATGAGAAGCGCATGGCCACGGAAGTAGCCGCTGATGCTCTTGGTGAAGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028495-Rps6:NM_009096:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PU(0.8=50.0)
A:
NA
C2:
PF0109214=Ribosomal_S6e=FE(33.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: