GgaINT0062197 @ galGal4
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66402118-66404701:-
Coord C1 exon
chrZ:66404528-66404701
Coord A exon
chrZ:66402238-66404527
Coord C2 exon
chrZ:66402118-66402237
Length
2290 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TTATGTTTCTTTTTCTGTAGATG
3' ss Score
10.24
Exon sequences
Seq C1 exon
GAATCAGCTGTGGAGTACCTCCACCTTTAGAGAATGGCGGCTATGCTGCTGAGGACTTTTTTGCTGGCAGCACCATTACCTATCAGTGCAACAGTGGCTACTATTTGCTGGGTGACTTTGAGATGTTCTGCAGGGACAATGGGAGCTGGAGCAGCATTTCACCATCATGCCTGG
Seq A exon
GTGAGACATGCCATACATACGGCTGCATGGACTGGCCATCTTGTACTTCTGTGCTCTTGGGTTTGGGTGCAATTTCATTCTGAAATTGTGAAAGCTAGGCAGTATCTCAGAAATCACATTCCAAAATACTCACATTTTTGAAATCCTGTGCTCAGCATTGTGTCAAGCCAGGACTCCAGTCTGGTACCTTTCTTTCTCAATCCTGTTACAAGTCCCAAACCCTATACTCCATACCTAATAAGTCTGCATTGCACTCCCAGCCTCTCTACTTTCACGTAGTCTTGGAATCCTTGCATTCTCTGCTTCTGAACTCTGCATTTCCCCACTGCTCAGCATGCCTGTCAGCAAGCAGCTGCAGCACTGAGTAGGCTGGGAGTGCAGTTATGGATGCAGCTCACATAGTTGCCATACCTTAACTTCCTTCCCTAGTCAGCTGGGTCTGATGTAGCAGATGTAGATTAAGGGACTGAAAGGTGAAAGACAAGCTCTCTGCTGTGTACAGAGGGCAAGACATGGCTTCTTGAAAGGCTGTGTCTCCAGCAGATCCCCTCTGGAATACACTGACAAGCTGTACTCAAATTGCTGCTGCTTCACTCATGACTAATATGAGTTGCTGGGTAATAACCTGGCAACATTTATGTTTGATTTGACTGGTTATTTTGTCCAAACGTGCAGCTACAAAACTTTGGTGTGGTTTTTTTTTTTTTCAGTCAAAATGAGCAAAAGTCAAGTGAACAGCCTTCTAGTTCTGCCAAAATTCTCTTTGGAGCAGGATCCATCTAGTCCTTTTGGACTCTAAGAACCTCCAAACAGACCAGCCAGTCTGTTGTTCCTCTCTTTAATCAAACACATTAACATGACCAGACTCAGAATAAATGTTGCACAGCTGTCCACATAGTTCAGTAGCTCTGCACTAGGGAGAATGATTTGGGAAAGGAAATTCCCTGTGCTTCACCTTTTAGATCGTCTTCTCTTTGCTAGAGAAGGAAAGTGAAAACAGTAACAATTAAATTAAAACCCTGGTCCATCCTTTACCTTTCTTACTCACTCTCAAGGCAGGCACAAACAAAGACTGACACATATGACATACACCTATGCCCTAGGGTATTTTTCTATGTTACAGATGACTCAGTGTCCTTCCAGTCTTCCTTGTCTTAAAAGAAACTACATGAGGAGCAGTCATTCAAGTTCTGCTGTGGTAGTATTTTGCATTCTCCTGATGCTTGTGTAACTGGCAACAGCTGTGATTTTACTGAACCATTTTCGTCCTGTATTTCTGAGAAACTCTCTTCCTTTTCATAGCATTGTTGGGATCTTTCATGCTGGCCAGACTCCTTCAGCAGTGATGACTTAACTCTGATTCACTGATTCAGAAGGTCTTGTTTTTTTATCTGTATTGGTTTTTCTTGCCTCAAAGTGGGCAAAGATCAGCATTTATCCTGTAGAAGGATTTTGAAATGAAGAATTGTTCTATCTCGTAGTGCTCTGGCTCATAGGAGGAATAATCTCTGTCACCACTGTTTTTCAATGAGATATTTTGAAATTAGTCTCTTGCAATTTATGACCTATTGTTTTACCGAGAACACTTCTGTTCAGTCAGGATTTGAAATCTCATATGAAGTACTTTGGGCTGAGGGTTTTTTTACTGTGCAGTACCAAGTGACATGTAGCATAAATTATCAGTTGCATTTCTAGGCACTGTTATCATGTAAATAGTTAATTATAATAACCGATGTATTTTGAACTCATTTTAACTTTGCTGTAAGCTGCAGACACTTCTCATTCCTGGTCTAATATAAGTCTCTTCAGCAAAGATGGGTCTTTTCTGATGTTTTATAGTTCAAAATGTTTCCCCCGTTGACTAAGTGTTCCTGTCTTAACATTTGGGAAGTTTGAGGTGTAAAGGATTTCTAAGTGAGTGTTTCATGCAAAAGCGATCCCTTTTAGTATCTGTCCAAACTAGTAGACAACAACACATGAGTTACACTGAATGTTCTTTCACTGCTTTGAAACAAAATACATTTGTGAAAGCATTGATTGAAGATGAACAGGAATTTTTCTTCAGTTTTCTCACATTTTACAATATTTTATAGTAAGTTACCTGGAAAACGTAAATACGAATTTTAAAATTAAATCTTTTTGCTGAAGCATCAAAACTGTGACTGAAGTAAGCAATTTTTAATTATGCTAATTAAAGCAACTCCTTTTGACAGTGAAACAGAAATTTGAAGCAAATGTGTATTACAAATATCATCCTAAAGACATCTTTATTATGTTTCTTTTTCTGTAG
Seq C2 exon
ATGTTGATGAATGTGCTGTTGGATCAGATTGTGATGAGCATGCATCCTGTCTCAATACAAACGGATCCTATGTTTGCACCTGCATTCCACCTTACACAGGAGATGGTAAAAAATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
NA
C2:
PF129472=EGF_3=WD(100=85.4),PF0008415=Sushi=PU(3.3=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]