HsaINT0162168 @ hg19
Intron Retention
Gene
ENSG00000165124 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:15985]
Coordinates
chr9:113194195-113194915:-
Coord C1 exon
chr9:113194742-113194915
Coord A exon
chr9:113194315-113194741
Coord C2 exon
chr9:113194195-113194314
Length
427 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
ATAAGCTGTCTTCATTTTAGATG
3' ss Score
8.42
Exon sequences
Seq C1 exon
GCATTAGCTGTGGGGTGCCACCTCCTTTGGAGAATGGCTTCCATTCAGCCGATGACTTCTATGCTGGCAGCACAGTAACCTACCAGTGCAACAATGGCTACTATCTATTGGGTGACTCAAGGATGTTCTGTACAGATAATGGGAGCTGGAACGGCGTTTCACCATCCTGCCTTG
Seq A exon
GTGAGATAAATGTTGGCAACTACTATATGAGATTATTCTAGCTCTGTAGATGACAGTCATCCCAAATTCCTGAGGTTCTTGAGGCATTGCTTTGTTAACTTTATCTCATCCCAGTAAGCTCTGGCCAAGCCATAGTGACAAAGCAGCTGTATGTAGAGGTGCCAGAAATGTTTTAAATTTTTATCAGGCTCCATATTAAGACTATATTTATATATCCCTGTCTTATACTTGCCCACCTATAAACTAGGGAAATAATAGCTTTTATTGTATATCTGCAATGTGATTATGACTGTTATATTTAAATTCTATACAAATATATGAAGTGTTGTGCATTACGTGATATGTAATGATTTAAAAGTAAAAACAGATGTTTGATACATACGGAAAAGGAATCAACTTTAATATTTATAAGCTGTCTTCATTTTAG
Seq C2 exon
ATGTCGATGAGTGTGCAGTTGGATCAGATTGTAGTGAGCATGCTTCTTGCCTGAACGTAGATGGATCCTACATATGTTCATGTGTCCCACCGTACACAGGAGATGGGAAAAACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165124-SVEP1:NM_153366:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTAGCTGTGGGGTGCC
R:
CTGCACAGTTTTTCCCATCTCCT
Band lengths:
294-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)