GgaINT0062417 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55698782-55699823:-
Coord C1 exon
chrZ:55699698-55699823
Coord A exon
chrZ:55698908-55699697
Coord C2 exon
chrZ:55698782-55698907
Length
790 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
AATAAACACTTCTTTTCCAGATG
3' ss Score
7.95
Exon sequences
Seq C1 exon
ATATTGATGAATGCGAACGCAACCCTCTGCTATGTAGAGGTGGCATGTGTGTGAACACAGAAGGGAGTTTTCAGTGTGACTGTCCTGTGGGACATGAACTGTCACCATCACGTGAGGAATGCATTG
Seq A exon
GTGAGTTTCCACTAAGAGTAATAGTCTTCAGCTTTCTGAAAAGGGCAATATTTTGTGCAGTGTGTTACTGGTAAGGATGTGACTGCAGAATACTGTGTATGGATTCTTTATCTTCCTTGGAATACCTTCAAATAAAATGAATTCCTTCGAATTAAAACCTTATAGCAGACCCCATAAAAAAACTCCAATGCCTGTGGCACTGTTGACTTCAAAGTGAGTTATTTTACCAGGCCTCTACAGATTATTAAGGAACTCAAAGGACTGTACTGCTCATGTTAACAACTTTCAATTGAAAGACATAAAAGTACGTAGTGAACCTTGTTCCTACAACAACAAAAAGTTTTTTTGTCCCCGTAGTGAAATGCAGCTCTGCTTTTTTGCACATAATTTACTAAAAAGCTGGGGGGAAAAAAACTAAAAGCTGTAAAGCAGGTTGCCTGTTTGGTTGCTGTGTTTGATGCATAGTCACTGCATGAGTTGGCTTAAACTCCTGCAAGTTGGAGTACCATGCACTTTCTGAGGGTCAGTATTCAGCATGTGCTGCTGTTAATATTCACAGACAAGAAGTGAAGAAAATAAACATTTGGTCACTGTGCACGCTATATTTGATCCCTAGACCTGCTATACAGAGGTCCATACCTTGAACTGGAAAATAAAGAGAACAAGAAATTGAACATGTTTGAATTCTATTGTTTTGAAATATTATTCTTTATCCTCTTTCTCTGGCATTTGAGAAGTTATAGTATGCATTCTGGCTAGCAAGTAATCAAAATAAACACTTCTTTTCCAG
Seq C2 exon
ATGTAAATGAATGCTCACTAAGTGACAATCTCTGCAGAAATGGCAACTGTGTGAACATGGTTGGAACATACCAGTGTTCCTGTAACTCTGGATACCAAGCCACGGCTGACAGACAAGGCTGCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCAACCCTCTGCTATGT
R:
CTACGCAGCCTTGTCTGTCAG
Band lengths:
238-1028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]