HsaINT0062457 @ hg19
Intron Retention
Gene
ENSG00000138829 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:3604]
Coordinates
chr5:127671680-127673814:-
Coord C1 exon
chr5:127673689-127673814
Coord A exon
chr5:127671806-127673688
Coord C2 exon
chr5:127671680-127671805
Length
1883 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTCTGTGTATCTTTTATAGATA
3' ss Score
9.95
Exon sequences
Seq C1 exon
ACATTGACGAATGTGAACGTAACCCTCTCCTTTGTAGGGGTGGCACCTGTGTGAACACTGAGGGCAGCTTTCAGTGTGACTGCCCACTGGGACACGAGCTGTCACCATCCCGTGAGGACTGTGTGG
Seq A exon
GTGAGTTTATCTCCTCAGCACATAAACCTGCCCAGCACAACTGGTAAAGACCAGGGATCAGTTCTGACAAACCTGTTGTTTGAGGAGCACATGAAATCTAGCTTATTAAAAGGTGGAAATTGAGATTCCCTACATCTGGATGCAGGCTGTGTCTTTAGTGGATGCTTGGGTGACACACTCGAATAAGCTGGCATTCTTCTGGTTGGCCTCTTTTTTTATAACAAGCCACGTGATTGGTCCCTGTGTGAGGAGCCCTGTGGAAGTCCTTGTGGTCTCATCCTCCATTAGGAAAAAATGGGAAAGCTACTGTGTGCGTTGTGCACCTTTGCCCAGCGTCTTCCCATCCACTCGGCAGACTCCGCTCTACGCCCCTGTGCCTGCTCACGATCGGCTTGCACATGTGTGAACATGGCGCTCCCTTAACCCACTTCTCATGGAAACACTGGGTTTCCTCATTTGCCCTGAGCTCTGTAGGGCTGCCAGAAAGGATATGAGAAGACTAATGACTGGTCTTTGGGCGTTGCAACCTATTGCTTTTCACAATACATGAAGATCTCTGGACTTACTATGTTCCTAGTATACTGGCTTTAAAACTTTGTTTTAGCCAGAAAGCATGTTCTTCATAGGAACTCTTTCTTAAAACCGTAAGCAAATAAGACAGCCTAAAATAGAACAGATTGCACACCAAATTTCAAAACATAATTTGAGCACACCTTTCCAATACACATATATTTATTTATAAGCCTTATGTATTGCTTTGCTAGTATATGAGGTGAATTTTGTCATAGATAAATAGATATTTTAAAATGATAAATGAAAAGGTTTTTATGTTCTTATTTCATTTTAATAGCGGTACAAAAGGCTTTTTCACACTAATAATTGCAGAATATTTATTCATGGTTGAACATATTGAGGTATAATGAGTCACAGATCTAAGTTTACTTTGTTATTTAGTTTTCGTGGATCTTACAGCTTAAAAACGTATCCCCCAAAGGAACAATGCAGAATATAAAATATATATTTCTGTATAATATACACTTAGTGATCATAAGCATAAACCCATGCCATATAATCTTCTTGGTTATTTTGAGAATTTGGAATAAATTTCTTGTTATATCTGATTATACTGTACTGTTTTTTACCTTACCTTATACCTGACAAGTAGTTTACATAAGGAAGTGTATCACCCTGCCATTTTCTTCTGTTATCTTGTGATTACATTATTGGTACTAGTTTATTTTTAAGGCACCTGCCCATATTATAGGGGTTAGTTTATTTTTAAACAGGCAGTGTGATTTGTAGATTACTATCCCGACACACAAAACATAACACAGTGTAAACAATTAAATACATGAGGGCCCTATTGTCATGCCTCTGTCTTGTGGAACCATCAGTCTTCCATCAGTATACTTCAAATCATGTAGGCAACACTTCACCATCTAATATAGACCAGGTGAGCGTGCCAGTGTAAGTTCATATATTAAGTAGTATTTAGCTTCAGTTCTGGCATATGTGAAATCTGTGTGGTCTAACATGATAGTCACTAGCCATATGTGGCTATGTAAATTCAGTTAAAATTAAATAACATTAAATATTCCTTAGTTATACTGTCCATATTTCCAGTACTCAGTAGCACATGCAGCTGTGTATTAGACCGCATAGATTTGGGAGCAGTTGCATCATTGTAGAAAGCTTTACTCAACAGTATTGTTGTAGATGGAAATAGAGAATCCAGCATTTTCTTTCAATCCCCCAGGAGAACATTTTACTTCCTCGTGAAGTACACAAACCCCTTTGGAGACCACTGCTCTGGTGAAGCACCTTTCTGATGGCTTTAGTGAGTGGACATTGTGTAAAGCATTACTTCTGTGTATCTTTTATAG
Seq C2 exon
ATATTAATGAATGCTCCCTGAGTGACAATCTCTGCAGAAATGGAAAATGTGTGAACATGATTGGAACCTATCAGTGCTCTTGCAATCCTGGATATCAGGCTACGCCAGACCGCCAGGGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138829-FBN2:NM_001999:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=PU(38.9=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAATGTGAACGTAACCCT
R:
GTACAGCCCTGGCGGTCT
Band lengths:
246-2129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)