GgaINT0062437 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55671195-55672431:-
Coord C1 exon
chrZ:55672306-55672431
Coord A exon
chrZ:55671312-55672305
Coord C2 exon
chrZ:55671195-55671311
Length
994 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
CCTTTTGTTTCTCTTTGCAGATG
3' ss Score
13.82
Exon sequences
Seq C1 exon
ATCGCAATGAGTGTCTGGAAATTCCTAATGTTTGCAGTCATGGTTTATGTGTGGACATGCAAGGAAGTTACCAATGCATATGTCACAATGGTTTTAAGGCATCTCAAGACCAGACTATGTGCATGG
Seq A exon
GTATGGAAAGAAAAAGCTTTTGTGGTTTAAAAACAAGGGGGAGAGAGAAGGGAGTGAGTCTAGATATATGTATATTTAATTGTATAAGAGGAATACATTGGCATTAAAAAAACCTGTTCATATATTTTTTAATGTAAAGCACATTAAGTTGCCATTGAAGTACAAATCACAGTATTCTCAGAGGTAGCTCCATGTTACTGAAAAATGTGTTAACCCCATTTTCACAAAAATACATAACAGCTTGAAAGAAAAGCTTACAGGTGATGTGATAAGAGCGTAGAGATTATGGAAACTATCCCACGGGAAATATATATATCTGCAAATAAATAAAAATGTTTCAGAAAATCCACAAGACCTAAGACAATACAATCTAAGTGACGTTCAGATCATTATGAAACTCCAAAGACTACTTGAGCAGAAGTCAGAAAGTACTGAATTCTTAAATTCAGTGCCTTAAAGAGTGGATGTATCCAAGACTTTTTAGGCAAACTTTATAATTCTAGATGTAATACTGGCATCATAAGTTTGCTTATACAAACTATATTGTGAACAATTACAAGACTCCAATATGGAGCATTTTCAGCAAATTCTCATGTGCATAAAAATAAAATATGTATATTACATTTCTGACATTTCGAAGGCTGTGATGCTCTACCCTTTGTACTGAATTCACGTAAGTAACATACATTAAGAAATGAAGAATTATTACTGGGGAAAATAAAAACACAGAATGCTTTGAGATATGCACTTATTTTTATCTTTCCAGGTAGAAGTATGTTTTAGAATACAAATGAAAAATTGTCATAGGTAAAGTACCTACAGTCTTACATGTACCCAGGAGCTTGCACACCATGCTGTAAAAATCAGTAATATAATATGAGAGATGAAAGGAGAGACTGAGGCTTAGAATACTATCACTGTGTGCTCATGTATCTCACTAACAAATACTTGGGTAAAACAAATTCCAGCATACACCTTTTGTTTCTCTTTGCAG
Seq C2 exon
ATGTTGATGAATGTGAACGCCATCCATGTGGAAATGGAACGTGTAAAAACACTGTTGGATCATATAACTGTCTGTGTTATCCAGGATTTGAATTAACTCATAATAATGATTGTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAATGAGTGTCTGGAAATTCC
R:
AGTTAATTCAAATCCTGGATAACACA
Band lengths:
222-1216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]