GgaINT0064430 @ galGal3
Intron Retention
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53634737-53635715:-
Coord C1 exon
chrZ:53635475-53635715
Coord A exon
chrZ:53634877-53635474
Coord C2 exon
chrZ:53634737-53634876
Length
598 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCCCTTCCTCTCCTCCTCAGCAC
3' ss Score
9.16
Exon sequences
Seq C1 exon
CTGCTGAGCATGAAGAGTTGGAGTGACATGAGGCAAGAGGTGATGTTCCTGACCAATGTGAATGCCTCAAACTCCTCTACACAGATCTACCAGGCTGTGTCACGCATTGTGTGTGGCCACCCTGAAGGTGGAGGGCTCAAGATTAAATCCCTCAACTGGTATGAGGACAATAATTACAAAGCACTGTTTGGAGGCAACAGCACTGAAGATGATGTAACTAATTTCTATGATAACTCCACAA
Seq A exon
GTAAGTGTAACCCTGCCATGGTGTAACATCCCATCTACTCCATAGCTGCAGTGATTACTGTTTTCCAAACTTGCACTAACAAAAGCACGTGGTCCTGAGGGTCAGCATATACCCTACTGTTTCAGAAGACTACATACGTGCTGTCTGAGCAGCCAGCTATTGTTTCCTGCATGTACTCTTAGGGACAGGGAGGGTACCAAGATGTAGGGGATTCTCAAAGGTCTTGTGTAGGATCCAGGAAGGCTACGTAGACACTTCCTGTGAAATGGGGTCCACAGTCACATGCAGCCTTTGAAAATATGTCATCTTCCTATGCAGATTTTGCCTGTGTCATGCAGTGGATTTCATAAGCTGTGCAAATGAGTATGGCTGTTATTGGTAGAGACTGTGCAGATTCTATGCACTTGCTGGGTGAACTGTGAAGGCTCAGGCTGAAAAGGGCATTTTGTGGATCTTTGCAGCAGAAGTTGTTTTTTGTTGTAAGATGACTGTTCTGCTGTCAGCTTGGACCATCTTTAAAGCACACACAAGTGAGGCATGTGCCTCCTGCAGTTGTCACAGTGCTTCTCAGTTGCTCATCCCTTCCTCTCCTCCTCAG
Seq C2 exon
CACCCTATTGCAATGAGCTGATGAAGAACCTGGAATCCAGCCCACTTTCCAGAATTATTTGGAGGGCTTTGAAACCTTTGCTGATTGGGAAGGTCTTGTACACTCCAGACACACCAGCCATAAGGAAGATCATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000037759:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGACATGAGGCAAGAGG
R:
TATGGCTGGTGTGTCTGGAGT
Band lengths:
344-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]