GgaINT0064431 @ galGal3
Intron Retention
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53633946-53634876:-
Coord C1 exon
chrZ:53634737-53634876
Coord A exon
chrZ:53634063-53634736
Coord C2 exon
chrZ:53633946-53634062
Length
674 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
CCTGTCTTCTTTGCCAACAGGTG
3' ss Score
12.04
Exon sequences
Seq C1 exon
CACCCTATTGCAATGAGCTGATGAAGAACCTGGAATCCAGCCCACTTTCCAGAATTATTTGGAGGGCTTTGAAACCTTTGCTGATTGGGAAGGTCTTGTACACTCCAGACACACCAGCCATAAGGAAGATCATGGCTGAG
Seq A exon
GTAACTCTAACTCTGTCCTCTGATACGTAGTGTGAGGTATGTGCTCTGACTGTACAGCTAAGCTGCTCTGTGTTAAATTGAGCTCAAGTGCAAGCCTAGAAAGGACTGTCCACAAAGCACAGTGTCCCTAGTCTCTCACCTCCCGTGCACTTGCTGTCAAAAGCTCAAGGAGAAAAAGCCAAGCTGAACTATGTTTCTGAGTCTTGCTGGAAACATTTCTGGCGGTGCTTTTTGATTACTTACGGACTTTGCAACTCTGATGTGGGATATGGGACTGGAAAGGACCTTGATAAACAATCAGGTGTCTTTTCCACTACCTGCTTGTCAGCTGATCCTTAATTGTTTCTGATAGTGGTTTACCTAATGTTCTCTAATCTCAAACTTCCTTAGCAACCTCTTCTATCAAATGGGAAGGGGTTGTCTCTGTGTGCCCTTCATCTCCAAGCAGGAAACATTCTCCACCAAGCCTTAAGCCCTACTCAGCCACAGGCACTTCTTTTTTGTATTTTTCCTTCCCTGTGCACAAGATTTTTCTTACTCCCATCCTTGCTGAATCTGAATTGCTGTTTGAGTATAAGCAACGCTCAGTACTTGATAGGCCAATGCACACTTTCAGCCCACAGTGGATCTGAGCCATGTTTTGGAAATAACCTTCCTGTCTTCTTTGCCAACAG
Seq C2 exon
GTGAACAGGACATTCCAGGAGCTGGGAGTGTTTCGCGACCTTGGGGGGATGTGGGAGGAGATAAGCCCAAAGATCTGGACGTTTATGGAAAGTAGTCAGGAAATGGATCTGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000037759:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTATTGCAATGAGCTGA
R:
CCGAATCAGATCCATTTCCTGACT
Band lengths:
257-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]