GgaINT0064436 @ galGal3
Intron Retention
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53627520-53629000:-
Coord C1 exon
chrZ:53628773-53629000
Coord A exon
chrZ:53627737-53628772
Coord C2 exon
chrZ:53627520-53627736
Length
1036 bp
Sequences
Splice sites
5' ss Seq
GAGCTTACT
5' ss Score
-8.73
3' ss Seq
NNNNNNNNNNNNNNNNNNNGGAA
3' ss Score
0
Exon sequences
Seq C1 exon
ATTTCTGCGTGTCATGAGCCGTTCCATGCCTCTCTTCATGACTCTAGCCTGGATCTACTCAGTGGCTGTGATAATTAAGGGCATTGTGTATGAGAAGGAAGCCCGGCTAAAGGAAACAATGAGGATTATGGGCCTTGACAATGGCATCCTTTGGCTAAGCTGGTTCATTAGCAGCCTCATCCCTCTCCTCATGAGTGCAGGTCTGCTGGTGCTGATCCTCAAGGTGAG
Seq A exon
CTTACTAGTTTGGTTTGTGACAGCAGAATCCAGAACAGTGGAGTGCAGTGGCCTCTGTTGGCACAGTGGGGAGGAGGTGGTGGGTGCTGGCTGGTCAGCAACTGTTGTGCAGATTGCAGCAAGTCCAGAATCCCCTTAGCAAGCAGTGTTGTGGGCCTCCTTGTACTAGAGCCATGTCAGAGAGCCCTTTCAATACGTGATGCACCTGTTGTTCTCTTCCAGATGGGGAAAATGTGCCTTACAGTGACCCTAGTGTGGTGTTCGTTTCCTCTCAAGAATCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Seq C2 exon
GAATCTGCTGCCTTACAGTGACCCTAGTGTGGTGTTCGTTTTCCTCTCAATCTTTGGCATTGTGACCATCCTGCAGTGCTTTCTCATCAGCACCGTGTTCTCCAGGGCCAACCTGGCAGCTGCCTGTGGAGGCATTGTGTATTTCACTCTATACCTACCCTACGTGCTGTGTGTTGCCTGGCAGGACTATGTCAGCTTCTCGCTCAAGATCTTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000037759:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(30.5=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(28.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGATCTACTCAGTGGCT
R:
ACACAGCACGTAGGGTAGGTA
Band lengths:
354-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]