GgaINT0064454 @ galGal4
Intron Retention
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54560302-54561011:-
Coord C1 exon
chrZ:54560979-54561011
Coord A exon
chrZ:54560408-54560978
Coord C2 exon
chrZ:54560302-54560407
Length
571 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTCTATCTGTACTCCTAGGTA
3' ss Score
9.03
Exon sequences
Seq C1 exon
CTTAAAGAATAAAATCTGGGTGAATGAGTTCAG
Seq A exon
GTGAGTTGCTGCCTTTTCTTTAACTTGTATATGTCCACTAACCCTTGAGCAGTGTGCTCAGGACAGATTCATTCTGCTTCATAGCTTATTATATGTGGCTCTCAACTGTTCAGTGTCCAGGGGGCACTGTTAAGAATAAACGGGAGCAATCCCGGGTTACATTGCTGAAAAGCCTGCTGCCTTATGTGGAGAGCAGTACCAGCTTGAAAAGATTTGCAATAGCAATATTCTCCCACAGGAGGTGCAGTTTTTCCAGCCAAGGGAAGCAGGAAGATGCCCTGCTTTGCCTGCACAGGAAGCAGGACAGCTGAGTTCAATAAAGACTGTTTATGTTATTGCAGACAGAGCGTTGTAGTCATAAGCTGAGTATTTAACCTCAGAAATAAGGAGCAGGAGACATCAGGGCTAAACAGCAGTGTGGAAAGATCATATTTCACGCTTTTTGTAAGAGTGGAGACATTTGCCTTGGTTATGGTGCAAAAATAGAAGACAACTAGAGAGGGAAAAGTGGTCTTTTCTGGAGCTGAATGTGTAGTTTGGTCTGTGCTTCACTCTCTATCTGTACTCCTAG
Seq C2 exon
GTATGGAGGCTTTTCCTTGGGAGCCAGAAGTTCCCATGTGCTTCCTCCAAGCAATGAAGTCACTGATGCCATTAAACAGGTGAAGAAGATCTTGGAGCTAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000024891:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(3.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]