GgaINT0064463 @ galGal3
Intron Retention
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53606409-53606610:-
Coord C1 exon
chrZ:53606550-53606610
Coord A exon
chrZ:53606479-53606549
Coord C2 exon
chrZ:53606409-53606478
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGAGTTT
5' ss Score
-5.9
3' ss Seq
TTTTTTTTTTTTTTTTTCTGGTT
3' ss Score
5.17
Exon sequences
Seq C1 exon
CCAAGGTAACAAAGTTTTGCATTTCTAAGACCCATTTATGCAAAACTGTGCAGTTCACCAG
Seq A exon
GAGTTTCATTAAGAAAAGGGTCTAGTTATAGTTCTCATTTACATTGTTGTTTTTTTTTTTTTTTTTTTCTG
Seq C2 exon
GTTTCAGATTTATAGAATGAAACGAAAGCCAGCAGTTGACAGGATATGTGTTGGAATCCCTCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000037759:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(6.0=53.5),PF0000522=ABC_tran=PU(7.6=25.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTAACAAAGTTTTGCATTTCT
R:
GGAGGGATTCCAACACATATCCTG
Band lengths:
124-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]