GgaINT0064464 @ galGal4
Intron Retention
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54553551-54554176:-
Coord C1 exon
chrZ:54554114-54554176
Coord A exon
chrZ:54553658-54554113
Coord C2 exon
chrZ:54553551-54553657
Length
456 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTGCTGTTTTATATCCACAGTGT
3' ss Score
9.05
Exon sequences
Seq C1 exon
ATTTATAGAATGAAACGAAAGCCAGCAGTTGACAGGATATGTGTTGGAATCCCTCCTGGAGAG
Seq A exon
GTAAGCTTATTTTGTCATTCTTACTGCTTCAGTATTTTTGAACGATTTTAGAGCAACACACAGCACGGAGTAGAGTGAAATTAGAAGCAGGTGGTGTTCAAATTACACAAAAGCGAATGGCCTGGAAGTGGAAGCAGTTTATGTCTCAGCCTCTCTCTTCCTTTGGAGATGGCAGAGAACTCTGCAACCTTTAGGACTAGAGATCAAAGTATGGCACTCTCTAAAGTTTAGCATAGATACACTATACTGACACTGCACCAAGGTAATGCTGTAGTTGATGCTTTTTCCCAACCTGAAGATTTATGCTTAGAATGAAAGTCCAGTTTATTCAGAAAATGCACTGACTTCTTCTGGGTCATCTTGAGAGTCAAGGTTGTTGCCTCCAGCCTTCTCAGTGATGAAAACTGTAGGGCTGGATCCTGTTCTCAGTGCTCATTTGCTGTTTTATATCCACAG
Seq C2 exon
TGTTTTGGACTTCTGGGAGTAAATGGTGCTGGCAAGTCATCCACTTTCAAGATGCTAACTGGTGATACAGATGTGACAGGAGGAGATGCTTTTCTCAAAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000024891:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
NA
C2:
PF0000522=ABC_tran=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]