GgaINT0066658 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:42864949-42866398:-
Coord C1 exon
chrZ:42866380-42866398
Coord A exon
chrZ:42865043-42866379
Coord C2 exon
chrZ:42864949-42865042
Length
1337 bp
Sequences
Splice sites
5' ss Seq
ATGCCCAGT
5' ss Score
-9.46
3' ss Seq
CATTTACAATTTTCAGATAGTGT
3' ss Score
-0.47
Exon sequences
Seq C1 exon
GAAGTGATAAAAAGAAATG
Seq A exon
CCCAGTGCATGGGAATCGTTACATCACGGCCTGAACCAGTGACTGAGCACCTGATGAAAAGGCATGGCAAGCCCTGGAAGCACAGGTGCAAACAATTCACCTGTGCAACCCTGGGCCCACCCTCCTCCCTAACCTCATTTAAGGGCTAGCAGCTGAGGGAGTAGCATCTCTGCTTACAGATTGTCTCCTCTGGTAGTTTTCCAGTCAGCCTGCATGTTTAGAATGGGGTAAGCTATTCCTTCCTTATTACTGGATTGTGACTAATACCTTTCTTGCGCTACCGAAAAGCTGCTCAGAGGCAATCATTTATTTCATACCATGCACTCACAATATGGGATATTTAAAAATTGGGTGATCTGTGAATTGCCTGTAGTCAGGTGGATGCAGTTCCAATTTCTTCATTTTGCCACTCATGGGCCAGAGGTCAGACAGCTCAGCTGAGCACCTAGGTAAGATGTTCGTGCAACTAGAACTGACAACCTGAGTACCATTTGCAACTAAGTTTTGAGAACTTAATACCTGCAGAAAGTCTGAATAGATCTTAAATAATAATAATAATAATAAAATCCCAGGAGCAACAAAGGTAATGTGTTTTTGTTGTTGTTGTTTTCGTTTGTTTTTCTAATATGGAAAAGAAAAAAAAAATGTATTTACCTGATCAGTACTAAATGTGAATCTGTCAAGAACAGCTCAGCGTAGCCCTCTTCAGTAGCAAAGGAAAGCAGAATGAAGAGTATCTCAGTGAAACTGCTATCAGTGTAAAACGGGTGGCTTTAAAAGCATTATACCATGATTATCCTGACAGATTAAATATTACATCTGTGTATGCTGCTACCACCACAGTGGAAGGGACTACAAGGAAAACTTCCTCAAGATGTGGTAAAGCAGTCCATCCTATGCTCTGAAGTATGGAATAAAGAACAACTCACTACATAACATTACTGTAAAATGGGGAAATCACAAACTGGACAGTCAGCTGTATCATGTTCTTCTCTTCATCCTTGGCATGATGCAACTGCAACATTCCTGTGCTTTTAAATGGCTTAAGCCTGTGAGTAGGATATTTTTTTTTCCTAGAGTTGAACTGAAAGATAAAAGCACTGAGTCTGTTCACACCAGAGGTTGTAAAGTTTGCTGCAGAGGGGGAGAGACCAGACCATTTGAACAGAACTTATTTCCATGTAACCTAAGAGAAGGCAGAGCTGAACAGAAGATAAAATGGTGCCTTGCCTTCCTTTGAGCCCAATCCTCCATAAAAAGCACTGTGGCTGAGTTGATGTCAGCTTATTTGATCACTACTTGGTTACATAATCATCCCATTTACAATTTTCAGATAG
Seq C2 exon
TGTTGGTAAGGATGGATGGACCAAAGAATTTGATACCTGGAGAACTGCTATCAGTGAACATGACAAGATGATGCAAAACTGGAGGAAGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024457:ENSGALT00000041370:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]