MmuINT1013373 @ mm10
Intron Retention
Gene
ENSMUSG00000051107 | Gm15440
Description
predicted gene 15440 [Source:MGI Symbol;Acc:MGI:3642353]
Coordinates
chr13:51687283-51691498:-
Coord C1 exon
chr13:51691289-51691498
Coord A exon
chr13:51687381-51691288
Coord C2 exon
chr13:51687283-51687380
Length
3908 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TGACTCTGCTTGTCTTCCAGAGG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTCCAGCAGATATCCGATTCATTTGGGAGAAGAACAGGCATGCCCTGGAGACGTGTGTACCTATGCAGACCCATGCACTGCCCGATGGCAGGGCCCATGCCCTCAGCTGGCTTCGGGACACCATCCAAGAAACCACCGAATACAGCTGCTCTGTCCTCTCCTCAGCAGGAAACCAGACTTCAAAGGTTCACATCACTGTGATGAGACACG
Seq A exon
GTAAGTGTGGTCCACTCTGGCAGCAACACGTCTAGGGGCTGACTATCACTATTTAGCCTGTAGACACTGATATGTAGCTTCAGTGTCCTATTTGCCTTGTGCTAGGGAAGACGACTTAATTTTTCACTGTTATATGAATTGATGTGCACATAAGCACTACACTTGTATGTATGTATGTATGCATATACATGCACACATATCATAGATGTCATGTGGTTACATGTGTAAGACCACTTACACAGCGCATATACTATACACTGCTTACCTCCCACTTTCCAATATGGGGGTCTGAATTTATGTCACTAGAAAAGGCAGCTGAGCTGAGGCTGGGAAGATGAGGCTATTGATAAAGTGCTTGCCATGCCAGATGGGTGTGATCTTCAGAACCCAAGGAAATAACTGAGTGTGGAGTCTGTGAGGCTCAGTGAGTAAAGGTGTTCGCAGAGCTGAGTGACCTAGTTTGATCCCTGAGACTCACGTAGCTGGAACAGAGAACTGACACCAAGTTGTTCTCTGATTGCCCACACACAGGTGAACATGAGTGTGCATTCTCAATAGAAGAATGTGATAGTATAAAATCTGGGTGTGAATGGTATGTGCTTGCAATCCTATTGCTGGGGAGACAGAAGCAGGCAGATCCCAGGGCTCACTGGTCTAACAGCCTAGCCAAGTCAGCAGGCCTCAGGATGCAGGGAGACCCTGTCTCACCAGACAAGGTGGACGGCTCTTGAGAAATGACATCTGGGATTGATCTCTCACCTCCACTATGTATGTGTGTGTGCTCGGCCTCCCACACCCTTCCTGTTCCACTTCCCATGTGCTGTACCTTTGCTGATTTCCAGTTGTGCGACACTTAGTTACCATAACAACAGCTACTCACTTGGGCATTATCCTTCAGCTGCCTCTCAGAAGAGTCAACGTGTCACTTTTGGACGGCTTTTTGAGGCAATGGCTCACGCTGAAGCCTAAACTGGCTTTGCTGTGATCCTCCCACCTCTGCTTCCCCAGTGCTGGGACAAGAGGCACACTGCACACCCGCTTTGGGATCACTTGTCACTTTGAGAGCAGTTATCTTCATGTTGGATCAAGGGTCTGATTTCCTGGGTGTTCTTTTATTGAGCCGCTGGTTTTTATGCAATGTCTTGTGGCATGCCTCATAGAACTAGCATGGAAACAACCATTTTGAAAGCTTGTATCCCTTGAGTGTTAGTTTGGTTGAGTACACAGACAGTCCTGACACACCACTCTGGCATCTGAGGGTACCATTTGCTGGTGCTGGGCCCTTTACCTGATCCCTCCCCCCGACTTTTTTTAAGAGCCTCACTATGTATCCTGTCACCTGTTGCCTTTTTTGTTCTCACTGGAAGCTTGTTTTCTCAAGCAGTTATAATTCAAAATGGCTTGGTTTTTTTTTTTTTTCCCACACTTTCCCACCAGCACATTAACTAGAAAGCCTTTGCTCTCCTGCTGGGGACATTTTCTTGACTCTCCATCAACTCTTCAGGATCGTTTCCAAGCTATGAGAGTTGAGCCACTTCCCTAAGGCACCAACTTTTCCTTTCCTGTCATCTTTTTTGGGGGGTGTGGTGGGTGTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGAAACTCACTCTTTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCTTCTCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCAGCTCCTATCATTTAACTTTTCTACTTCCTCATGCATTTTCTCAGTCTTACCTTCCAAACTATCAGATCTTTTAGAATCAAAGTTTTTGGTTTTATTGCATTTTGCAGATCTTCTCTTTGCCTGGGAGAATATGAGCAGATCTCACCCTCCCCATTTCCTCCTAAGTTGTCCTTTTCAGAGCATGGGATCTGGACCAAGTAGCATCAGCATGGCTTGGGGCTCCCTGGGGAGTCAGTGGTCAGGACTGTGGCCCCCAGTGCTGATGGAACAGGCTGGTGCTCAGCTCTTCTCAGCTTGAGCTACAATCCCTGCCTTCCCCTGGCTCTTACAGAATGCAAGGTTTGTCTCCACAGAGCTGGGACTCAAAGCCTAGCATCAAAGCCTAGCAGTGGCCCAGACTTAGAATAGCTAACCGAGCACAGCAAGGCTTAGTAGTTGGGTTGGAGATGTAGAGACTTAAGTGGGAAGAGGGCAGGGATTCCTCCTTCAGTGTTGACTGTCCACTGGACCTGTCTGCTACATGCCCAACCCAAGAGACCTTTTGTTGTATGCTAGGGCAGAGTGAGGTTGTCACTGGTTGGGCACTCTTTTAAGCCATATACACCTGGGCATGCTAACTCCTCCCCACTCCCCTTATCTAGAGGACTCACTCAGGGCTATACCACAGGCCTTGCTGTGCAGTGGTCTTGGGACAGCAGCCAAGTCTCATAGCTTTGCACTTTCCAGGTCCCCTGCAGCTTCGTCTAGTACTCTCTTCGTGGTTTTACACACAAACAATAAAAAGTTCCTCTGCTGTCTTTAGTGGGTTCTACAGAAAACAGATCACCTTTCACGGCTGAGCAATCTGGCCTGGTACTTGGCTATTGGGATGAACCAGAGTTATCAGAAGGGGCCAAGCAGCTCACTGGGAGTTAGGGCAGCACTAGCAACAGCTACAAAGTCACCCTGCACAGCGGGAAGTGATTCTTTGTTAGTTGGAGGGGCACACACTGCTCAGTTGTGCTTTCAGAATCAGCCTGCAGGGTTCCCAAGGATCGCTGGGAAGAACTGGCCTCTCCCCTCTCCTTTTGGCTAGTAGGTCAGAGCTTTAAGCAGGGGCTGCCATGGCACTCTGAATGAACTGGGGCCTTCACGTTGGATGGGCTCGTGTTCATGGCACTATTTCTGACATTGGCATGAGCAGCAGTTCTCACTCTTGTATGCTGCTGGGTGTTTTCAGAATCCCAAAGAAAGCTTAGGGGACTTAGGGGACTGTGATGGTTTGTATTATCAGAAGTGGCATTATTAGAAGGTGTGGCCCTGTGGGTGTGGGCTTTAAGACCCTCTCCCTAGCTGCCTGGAGGCCAGTATTCTGCTAGCAGCTTTTAGATGAAGATGTAGAACTCTCAGCTCCTCCTACACCATGCCTACCTGGATGCCACCATGCTCTTGCCTAGATGATAGTGGACTGAACCTCTGAACCTGAAAGCCAGACCCAATTAGATGTTGTCCTTATAAGAAATGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAAGACAGGGGACCATGGAGAATGAGAGGCAAGGAAAATCTCCCTCAACCTCCAAAACCTAGCCAAAATCCTTCCTGAAACCCTACCAAGTTTGGTAAGAGCTATGCTGAATTCTGAGCTTCAGCACCTGCAAAGTGGAGATCTCTGGCACCTGGTACAGCCATGGGAATAGGGCCTCTGACATCTAGGAGACGACAATAGGCTGTGGAGGACAGATCCACTGGAGCCTTCGAGGGCAGTTACCAGCAGAGCTGTGGCCGGGAGAAAGGGGGCGAGTGGAGGGAGACACGGACTGTGTGGTGGCATGTACTTGGAATCCTAGAAATGAAAAGGCTGAAGCAGGAGGATTTCAAATTTAAGTCCATCCTGGGATACAGAATGAGTCCAAGGCCAAGTCAATCAACATGGCAAAACTGTTTCAAAAAACCAACCAACTAGTAATGGAATGTGAAACCCCTGCTCCCCAGAGCTCTGCTGTGGCCCATTCAGGCCACTGAGGGGATTCCCCAGTGGGACAGGCCACTAAAGCAGACGAGAACTGGGATCCACCCGCCCAGCCTATGGTGTGGTCCTGGACAGTGTGAACCAACAGCAACCCGGAGGCTGCAAAGCTATGGCCTTGACTCTGCTTGTCTTCCAG
Seq C2 exon
AGGCACTGCAGCAGGAAAAGTGGAGCCAGGAACTTGCTACGTGGCGTGCTGTGGCCGGGGAGCATGACAGGCTGATGCAGGGCTGGAGGAAGGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051107:ENSMUST00000110042:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059386=Self-incomp_S1=PU(59.0=98.0)
A:
NA
C2:
PF059386=Self-incomp_S1=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types