GgaINT0067967 @ galGal3
Intron Retention
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70115647-70115975:+
Coord C1 exon
chr4:70115647-70115721
Coord A exon
chr4:70115722-70115852
Coord C2 exon
chr4:70115853-70115975
Length
131 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TCTTTTAATCTGCCTGCTAGATG
3' ss Score
8.05
Exon sequences
Seq C1 exon
ATCTGGTTTGCTTTTGTCAATGGCTTTTCTGGACAAATTCTCTTTGAAAGATGGTGTATAGGCCTTTACAATGTG
Seq A exon
GTAAGGTTGTTTTTGTGTTTTCATTTTCAATCATAATCATAAAGGCTTCTTGACTAAGCAAATTTGAATAATCCATAAGCAAGGCTTCACTTCTCAACTCTTGCAATATGTTCTTTTAATCTGCCTGCTAG
Seq C2 exon
ATGTTTACAGCAATGCCTCCACTGACTCTTGGAATATTTGAGAGATCCTGCCGAAAAGAAAACATGCTGAAATATCCTGAGTTATACAAGACTTCCCAAAATGCACTGGACTTCAATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236:ENSGALT00000023022:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGCTTTTGTCAATGGCT
R:
CTTGGTATTGAAGTCCAGTGCA
Band lengths:
195-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]