GgaINT0067967 @ galGal4
Intron Retention
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67823590-67823918:+
Coord C1 exon
chr4:67823590-67823664
Coord A exon
chr4:67823665-67823795
Coord C2 exon
chr4:67823796-67823918
Length
131 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TCTTTTAATCTGCCTGCTAGATG
3' ss Score
8.05
Exon sequences
Seq C1 exon
ATCTGGTTTGCTTTTGTCAATGGCTTTTCTGGACAAATTCTCTTTGAAAGATGGTGTATAGGCCTTTACAATGTG
Seq A exon
GTAAGGTTGTTTTTGTGTTTTCATTTTCAATCATAATCATAAAGGCTTCTTGACTAAGCAAATTTGAATAATCCATAAGCAAGGCTTCACTTCTCAACTCTTGCAATATGTTCTTTTAATCTGCCTGCTAG
Seq C2 exon
ATGTTTACAGCAATGCCTCCACTGACTCTTGGAATATTTGAGAGATCCTGCCGAAAAGAAAACATGCTGAAATATCCTGAGTTATACAAGACTTCCCAAAATGCACTGGACTTCAATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236:ENSGALT00000023022:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGCTTTTGTCAATGGCT
R:
CTTGGTATTGAAGTCCAGTGCA
Band lengths:
195-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]