GgaINT0068145 @ galGal3
Intron Retention
Gene
ENSGALG00000008141 | COL4A5
Description
NA
Coordinates
chr4:14049636-14052219:-
Coord C1 exon
chr4:14052199-14052219
Coord A exon
chr4:14049702-14052198
Coord C2 exon
chr4:14049636-14049701
Length
2497 bp
Sequences
Splice sites
5' ss Seq
CTGCCAGGT
5' ss Score
-7.66
3' ss Seq
AGCTTCCTCCATTTTTTTAACAG
3' ss Score
-3.77
Exon sequences
Seq C1 exon
ACAAAGGGGCCCCCTGGTCTG
Seq A exon
CCAGGTATGAAGGTAAGTGTTTTTAACTCTTGCATCTAAGTACTAACCACGCATAAGTGTGCAGTGTGATCTGGCAAAAGTAAGCTGCTTGCTTTCATTACAAGACCATATACATCCATTGGAATCTGGAGTGAAATTCTGCAAAAAAACTTACTGCTTCTAGGTCATTCCATTGCAACTAACTAGAAATTCTGCACTAGCTTGACTGGAAACTGTTTTCTGAAACTCATTCCCTTGGGAATGTGAGGGACAGCATCTTGTTTGAGAGGCATCAAGTTAACAGAAGGTCTGCAGACATCTAAATGCTCTGCTAGTCAGTGTGAGCGCTCAGAAGCGCAACTAGAGATTAAGCAATGGTAATTTAGGTATCCAGTAAAGGGAACGGTGCAACAGTTTACATTCCTTTTGGAAATGTGCTTCCCTACTTCTTAGATTACTTATGTAAATGACTTTTTTTTCCCTAGTGTAAATAGTCTCACAGTCTGATTTTGGGCCTTTGAGGATTCCTTTTAAGTTTAGGGGGGGGTTATGTTTTTTTTGTTGTTGTTGTTTGCTTGGGGTTTTTTATTTTGTTACTGTATCCATGACCTATTTGAGCATGAGTCAAAACATTAGTTTTGGTTCACATCTATTTAAAAGGAAGCTTGACCCCCCCACAGTGTTATTCCATTAAACTCCTGAGAGGACAGCATAACGCATTGGTACTGGGAAATGATGACTATTAAGCTAAACTGTTTTTCTCAGCTCCATCCATCCCAGTCATTGTGCAGATATTACAATGCTAGCTGATCACAACATTTACATGGAAAAGATGTGAGTTGAAATCAGTAATAAATACTTTAGATCATGAAGTGTGACTATTACAGTAGCATACACAGCATTAATCTCATGAAGTGGGACACTGGAAAAAGCTGAAACCCTTTTTTCCGTCGTGTCATAAAAGTTTTCTGTACATGGAGCTGGAATGCCTCTTTTGTGAAGCATTTATATTTCAATCCCCTCTGGTCTTTTGGAGTTTAAATCAATGCTGATACATTTGTACACACAAAAAGAGAACCCTTAACAGTTGGTAGTTTAGCCATTTAAAGAATTCTGCAAATATGCAATAATGTATCTCATTAAAATAGGTATTTCTTGGAGAATCCAATGCTTAAATTTTAAGATGGAGTATAACATAACTCTGATTCTCTCATAGTTTTAAGAGTCATTTTTTTTCATCCTTTGGAGTCAGAATGGCGATAAAGATTTGTTGAATATGCTAATAATTAAAAGCCAGCTGGTTTTCTTCTAGGGCGAAGCGGGTGAAATAATTACATCCTTGCTGCCAGGACAGAAGGGTGACCAAGGATTTCCAGGTCTTCCAGGGATACCTGTAAGTTGAATAAAGTACTGTTAGACTATGTTCTACCAGAAATATAAAAGGAAGGGTATTTCAATGACAGCACAGTTGGAACATTTGGTGCTAGGGAATCCCTATGTGTACGGGAAAGGGCAAGGCTCATATTTACTGTACCTCTAGTTTACACTGTGAGAAAGGTTTCAAAAGTGCTTCCACATTGCTCTTAATAGGGTAGCCACAGAGGAGAGAGAAGTCCCCTACTCAGGCAAGCAGTGTCCAGCAGACAATGGTTCTCACAGTTACTGACTTGCTTCACTATTTCCCCTTCCTGTTGCCACTTCCCAGATATGCTCTGTATTAATTCTGGAGCTCCTTTTCCTTCTTTACTCTGAGGTAAAGTGAGTAACAATCTGCACTTCTGGGCTGTAGCCGCTGTTTTCACTCGGGGGAAGAGAGGGTAATGTCTCAGCTGTTCTCCTCATGTTGTTCCCCGTGAGCAGTGTTTCTGTTCTCCCAGCAGTCTTCTGTGAAAGCAGCTAGTGACTCCAGGCCCTGTGCTTCCCCTCTGAACCATTTATTACTTTAGTGGAAGAACAAGGGGAGCAGAAAATGAGTCAATCAGTCTGTACTGGACAGAAGCCAGAAACTCCCATTTCCTGGTACAGAAAGGCAAACCTCAGGCTATTCTGACCAGACTGAGCCTGTTAGCATTTCTGTTCCTCTGATCTGTGCTTTCCTATTGTCTGTTTCTGGATGGCAGGAGTCACAAATACAAAGTGTTTTGTTGTTCTCTCTCAGTGCATTCAAGAGAAAGAAAGAACAAAAGTAGTTCAGAACAAGCAAAAAAGCATTCCTTTATCCAAGCCAAAGAGAAGTATTGATATAGAGAGCAGAACAGTCTTGGCACAGCATACACTCCTTTAGGCCTTTCATCTAGAACAAATTGGTAGGTTAGTGGTCAGTTCCTTTGATTTGACACCTATAGGATGCCAGCTGTGCGTTTGGTGTTTATTTTTTGGTTTGTTCTTTTTTTTTTTTTTTTTACCTTGAAGGTCTCTCATTTATCCCGTTGTTGTTGTTGTTGTTTTTGTTTGTTTGTTTTTTGTTTTCTTTTTCCCATAAAAAGTGTCTCTCTGATAGCTTCCTCCATTTTTTTAA
Seq C2 exon
CAGGGTCCACCTGGTTCCATAGGAATACCAGGTCCAGTTGGTCCTCCAGGGCCCCCAGGTTTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008141:ENSGALT00000013221:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(12.2=85.7)
A:
NA
C2:
PF0139113=Collagen=FE(42.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]