GgaINT0070275 @ galGal4
Intron Retention
Gene
ENSGALG00000010214 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr4:34018979-34022778:+
Coord C1 exon
chr4:34018979-34019136
Coord A exon
chr4:34019137-34022590
Coord C2 exon
chr4:34022591-34022778
Length
3454 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TGCTTGTCTCTTTGTTTTAGGAT
3' ss Score
12.72
Exon sequences
Seq C1 exon
GTGTTCAGAACGGACCTGATCACTGCCATGAAGTTACATGACTCCTTCCAGCTGAACCCTGATGAATACTATGTGCTGGCAGACCCCTGGAGGCAGGAGTGGGAAAAGGGAGTGCAGGTGCCAGTTAGCCCAGGGACCATCCCAGAACCAGTAGCCAG
Seq A exon
GTATAGTTTGGAGGAACGTAAACAAATACATATTTTTGCTAGCAGCTTATGTCTATGTTGCTTTGGCTTCTTGAGCTTTGTTCCACATTATCTAGCTAGGAAGAGCAACGTGTCTCAGCTTTCTGAATGGTTACAGCAGTCGAGAATTGGGCCTCTTCTGCCAATGTGTTGAAATATCAATGTCAGAGAATCATTTTTGGCTTGATGTTAGGACGGAGGGTGATGACAAAGCCTTAAAAATACTTTCCAGTTTTAAACCCAGGCTTGATCTCACTCAGCATTGCTGGGAATTTCCTGTATGGTGTGTCCTGTGCTTACTTCCAAGCCGTAGGCTTCTTTTCGAGGTACAATTAGACAAGCCAAATTTAAGGGCTAGAGAAAATACAGATTTTTTTTCTTGTCGTTTTATATTAATTTTTTTTTGTCATTTTATTTACTAACTTAGAACGTTGTTGTTCATTTTAGCTGTTGTAAGAACCATCCAGATGTGCATGTAACAATATGTTAATGTGAGACTTTCCTGTTCTTGTCCAAGAAACCCTTATTTTCCTTCCCTTGTTTGTTACGCGTAGATGTTGTTTTCTTTTTCAAATGAAACAGTCCACTTGTAAGGGCAGGAGCATTTTGCAGCCCATCTATCTGTTTTATGCTCAGTCAGGACTGGAGTTAGAAGACATGAGGAAAGGATTATTGCCATTTACGCAAGCTTGATCTCTGAGTAAGTCCAGTCTGGTGCATGAGGCGTTACTAAGTGACACACCAGTGCCAACAGGGCCAGAACAGTCTCTGACATGCAGCAAAAAAATCTTACGGAATACCACTGCTATTAAGGCTTTCTCTGGTGGCTTTACCATCGGAGTAGTGGAACTACAGGAACACTTGTTCGTGCTTTCTGCATTCTCTGCACAAACCTGTATGTAGACTGCTGCACGGCCCCACCAGGTCTGTACAGTGAAGAAAACCTGCTTGCATAACAGATGAACCCATTCCTTCTTTCACCTTCTGAAGGATCGGGCCTGGGGCTCTGAGGAGAGCTCAGCACTGAGAGAAGAACTCAGAACTTCCTCATCTGCTATGTACTTCAGGGCACAGGAGCATCTAGTTCCCTCCTTCCCACACACACACACACACTTGCACCTTTCTCCACACTGGCCTCACCCACTGCCTGCAGGAGGGCCAGGAAACCAGCCGGCTTTATTGAAAGGAGACCTTCCCAGGTGTTCACCAACCTATATCTGCCTTACATTTGAGGAGGTGGTTTGGTGGTTCTGTCAGGTCCAGGTGCTCACTGAAGAGGGAGCCGTTCTCTGTGAAGGGCCAACAGAGAATGTGCTCTGGAAAGGGAAAAGGAAAAGAGAGTTCCCAGAAGTTTGATGCTGGCATGGAAGGCACCACTTTTTTTGTGGTGCTGAGCTGTCTTGAATGGTTGTGTTGGTAAATACCTGCTGCACGGCAGCCTTCTGATGCCTGAGAATTATCCTGTTTGTCCTCTCACAACATACTTGGGAAGCCCTGCCATAGTAATACTGGAGTCCTGGCACTGTTCTGTGTATAACTGTGGGAGGGAGTGTTGAGGTTACTGCACACTGGATCAGCAGTAGTCAAATAGTAGCTGGTAAAGAACAGAAGGAAAATACAGTACAGAGAGCTTGGTCAGGGTGGTGAGAGTGAGTCCAGCAGGGCGGTGAGAGAAGCAAGACCATGTGGGGCCTCAGCGTAAGCATGTGCTCAGACAGAAAATTCATTTCAGTGTCCTTTTTGGTATGTCACAACTTTTCCAGTTCTTTCTGCCACAAAAATAAAGGGATGAAGGTGGTCTGTTTTGAGGCCAAATTACCTTTGCTTATTTCTTTTGTGTCACTACAGCATCATCTAGTCAGTGTGTGCAGCATGCTGCCCAGAGGTTGTAATTTCGATGCAGAGAGGTACTCGGGAAGGAATTTATGGTACAGAAGATTCAGTGAGCAGTGCCTAGTTTAAAATAGATTCTCCATGAGATGTAGTAGCCTGTAATATTTTAATACTGCAAAGTATAACCAGGGATAGCCCTGGCAATGCCGTTAGCCTGGCAAAATCATTCAAGTTCGTATTCTGCCACAAATCCCTTCTGTACCATAGAAGCTCAGAATTCAGTGCTTGGCTCTTGTCTGTGATTTCTCAGATTGTTGTCTGGATTAGACTAGGTGAGGGGAAGAGTTAGGGCTGCGCAGGAGACTGAAATAGGTAGAGAGTTCCAAGAGATCTGCATGTGCAGATATACTAATCGCAGATCAGGAGATCTTTCTACGGTAAGGACTACAGCTGGGAGCAAAATAGAGTGGAGGACATCCTCCTTGCTGTGAAGCTTAGGCTGTTCTCAGCAGAAAGCTCTGTCTGCACCGTGTTGTCATCTCCTCCCACATAGGGCTGGAGCGCAAAAAAAGTCCTCAATACCAGTGCTACATGAGGAATTTATTTTAGTGTGTGCAGGTAACTCAGAGAAGGTGCAGCATCCTCTACTGGGAGGAGCACGCTGTGGCTGTACTGACAGAGTTGTCTGGCAGTTGGAGGCAAATCTTCAGCTTGCTGGGAGAGTGGCTGCTGTCCTTCGCAAATTGCATTTTTGCCCACAGCTCCTGGCTTTGTGAAATTGCAGTATTTCAAGAATCTGATGTAAAATAAGTTATGTGCTATAGGTATTGTCCTGTCCCCAGAACCAGTGCTTGCTGTCAAGCAAAATTTCAGTTGGCTTGCAGCTCAGATACACTCTCATGTTTTATTTGTTGGTCAACTGGAGCCTCCAGACCCTGAGGGGAGATGGGTTTCAGTGGCTGCTGATTAATACTTGCACAAAAAGGTTTGATGCAGCATGGGATTAGTGACTGTAAAAGAGGAAATGCAGAGCCAGGATGCCAGAGCTTGGATCTGCTTGGGTAAGTGAAGGGAAAGCTGTTGTGAATTGCTGATTCTCTGTGGAAAGTTCTTCTGAATTTCAAAAAGGTGGTGATGCTGTAGCTGCACACACATCCCAAACACCCAGAAGCAATATACCATGAAAATTCATTTCCTTATTTGTAGTTGATTGGTAGTTAGCAGATGGATTTTAAAGTCCTAGAATAGTTTAACACATGTATATGACAACCACTGCTACATAAATACAGCATATACTCTAGCTCTAAAGGAGCATGAATTTCAGGTAAGAGTAGCCAGAGTTCTGTCCTTCAGTCTTTTCATTGTATTTATAGTTCTGGTAGCAAAATGGATTTCTAGTCAACTCCAGTTAATTTCTCATAACATTGCAAATCCTTTATAAAATTGCTATGTACTGTTTTCTGTTCCCTTCTCAGTGGTGCAAGATACACTTAGAAGATTACTATTGATTGTTAGCCACTTAGAATGAGGCATTTTGAATTCTTCAGAAACGGGTCTTTCAGCAACCCCAGTTACCTCGTGTGTGCTTGTCTCTTTGTTTTAG
Seq C2 exon
GATTGTGTCTGAGACAAAAGCTGTCACATTTACACGTCCCCGGAAGTATATTTCTTCATCAGGCACGAAGCCTCCAGAGCTGGGTTACGTTGACATTCGAACCTTAGCTGACAGCGTGTGCCGCTACGACCTCAGTGACGTGGATGTAGCATGGCTGCAACTTGCCAATGAAGAATTCAAAGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010214:ENSGALT00000016607:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(34.2=100)
A:
NA
C2:
PF105134=EPL1=FE(41.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]