HsaINT0123939 @ hg19
Intron Retention
Gene
ENSG00000077684 | PHF17
Description
PHD finger protein 17 [Source:HGNC Symbol;Acc:30027]
Coordinates
chr4:129767530-129770322:+
Coord C1 exon
chr4:129767530-129767687
Coord A exon
chr4:129767688-129770134
Coord C2 exon
chr4:129770135-129770322
Length
2447 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CTTGTTTTTTTATTATCCAGGGT
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTGTTTAGGACAGACCTGATCACTGCCATGAAGTTGCATGACTCCTACCAGCTGAATCCGGATGAGTACTATGTGTTGGCAGATCCCTGGAGACAGGAATGGGAGAAAGGGGTCCAGGTGCCTGTGAGCCCGGGGACCATCCCTCAGCCTGTGGCCAG
Seq A exon
GTAGAGATGCCCTGAGGACAGAAGCCTCTCCACCCACCCTTGCTCTTCTTCCCTGACAGCAGGCATCTGAGAAGAGACAATTTCTGTGGGAAGAGACAGTTTCTGAGTTAGCATTAAAATATCATGAGGCCTCAAGTGGAAATAGAAATTCAGGAGCAACATACTTCAGGCATACAGGGTAGTGGTTTTGAGGGCCATGAGCCTCCAAACTTAACATTACAGCCACCACTGTGGGGAGGTGCTGCTTTCTTATGAGAGGAAGGCAAATTCCAAGACATCCTGGGAAGTGATGGGCTAGGGGAGGAAAATTTGGGTGTTCACACGTCTGCATCCTCTTTTCCTGCCCTCCGTATTCGCTCTGGAGAGTGGCTCTCCTGGAGAGAAGCATCTGGCTTTGTTGGGAACTAGCGCGGGCAGCTGCTCTGCCTACTGCGGTTGCCTCTGCCTTTGGAGGAGGACAGGTGTTAGGAGACCTGTCAGTTAGGGTTTGTGGAGAGGGGAGTTTTGGAGGGATTTATTTTGACTGGTCACATTATTCTTGGGGTACGTTCTCTGGATTTACTGACTTATCTTTAAGGATCCCTCAGGGTCGAGTCCCTGCCGACTCTCCTCACAATCAGGTTGCAGCTAGTTTACTCATTTCCTCACTGTGCCACTCTGTGCCACCTGGAGAGTCCTGTTAGGAGGGAGGCTTGAGTGCCCTCTGTGCTCAGCCGGCACCTGGCTTCTCCGCCATCATCAGTTGGCTGCTGCTTTGCGAAATAGTGTCTTTCTCCACGCTGAGTCATTACTGAACTTGCTTCCTGGCCCTCACCCACTTTGTGTCTCTTTTTTTGGGCACTTAAGATTATCAAATTTGAGTTGTCATTTTGGGATCTCTGGGGAGTCTATCCAGTGGTGACAAATGCCCCTGTCTTACTCAGGTTTAGGTGACCAGTCAGGAGTGCCAGGATGGCCCCCACAGGCTAGAGTCTGGACCTGTGGAATGGAGTGGTCATGGGGCCCTGCGGGGCAGACCAGGTATCTGCCTCAGAGCCTGTGTCTGAGATGCAGCATCACCTGATTCAGCACTGGCAGCCCCAGTCCAGGAATCACTTGCTGAATGCTTCACTTTCAGTGGGGAGCCAGGACAGAAGTGAGCATTAATACAGCTTGTGGAAGTTTTACAAGCTGTATTAAAGTTGGAGCCCTGAGCAAGTTGGATCCCTGCTCTTGGCTGAGTAGGAGAAATAAATCCCTTCAGTTTGTCCATGTCAGTGTCACGTAGATAAAATCACTCCCGTAATATAAGGGTGATGAAGGTACTCTGACAGACTCTGGGCAGCCTGTTGACAGTAATTTAAACTGTGGAAATGCATATGTGGAAGGACTTTGTTGAGGCCTGGGGTCTGTGATTAGGAAGATGGCCTTTTTTTGGTTCCAAGTCGGGAGTGATTTGCTCTTGCACATGCAGTCTTATTTTGAGTGGGGTGAGTTGGAAGGCACCACTCCAGGTGTTAAAGGTCGGGAGAGATTGTGTGGCAGTACCAGGAGGAGAAACTTGTGCTTTTGTTCCTGGGATCATGGGTATATGTTGGGAGAGTCAGTCCCCTTCTTGGCTGGGACTCTGTTTCTTAGATTTTTTGGTAATGGCCGGGGTCTTATTTCCTTTTTTTTGTTTGCGTTTGAGACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTACAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCCCAGCCTCCCGAGTAGCTGGGGTTACAGGCGTGTGCCATCATACCTGGCTAATTTCTGTATTTTTAGTAGAGATGGGGTTTCACTGTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAATGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGGGCCACCTTGCCCCAGCCCAAGGCCTGATTTTCTTTTCCCTCTCTCCCTCTTTTTTTTTGTGAGGTGTGAGGGTTGGCGGGTTTCTCCCTCTGGTTCTCAGAGTCTGCTGCGCCTGCCCTGCCTGTGTGGTGCCCTGGTTCTAATGGCCTCCAGCAGGGATGGGCAGGTCTGGTTAAGGGAAAGTGATTTAATGACTAACTCTTGAAATGTATGGGTCAGTGTGTTTTGGTGTTGGCTGCAGGCCAGAGTGGTCAGAGGTGGTGGGCAGGGCACAGCAGGGTCCCGGGAAGCAGATTTTGAAGGCTTCTACAGTGTTTTCATTTGTATCTATTGCCTGTTAGCAGGCTTTAACAACTTCTAGTTAAGGTTTTATTAGCAGTGACATTCAGGTTTTCAGCCTCTGGTGATGACCTGGGGCTCTAAGGGTTGGAAGAGGAAGACATTTGGGGCCTTGTGGCACACTTCATTGTCTGTGGCTGAAAGGGTAACCTGGCTGCCTTGTTTTTTTATTATCCAG
Seq C2 exon
GGTTGTGTCTGAAGAGAAATCCCTCATGTTCATCAGGCCCAAGAAGTACATCGTGTCATCAGGCTCTGAGCCTCCCGAGTTGGGCTATGTGGACATCCGGACGCTGGCTGACAGCGTGTGTCGCTATGACCTCAATGACATGGATGCTGCATGGCTGGAACTGACCAATGAAGAATTTAAGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077684-PHF17:NM_024900:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(34.0=100)
A:
NA
C2:
PF105134=EPL1=PD(29.0=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)