GgaINT0070337 @ galGal3
Intron Retention
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53157500-53158840:-
Coord C1 exon
chr4:53158773-53158840
Coord A exon
chr4:53157595-53158772
Coord C2 exon
chr4:53157500-53157594
Length
1178 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TGAGTTTATCTTTGATGTAGTCG
3' ss Score
4.21
Exon sequences
Seq C1 exon
TTTAGTGCAAATCAATCACATTGCATCATGGCAACAGACTCTATGGAAATCGACGATGCTTTGTATAG
Seq A exon
GTAAGAGTATCTGATTTGTAAGTGTTGTTCTTGACGTTTCAGCAACTCTTCGATCTACAAACATTTATGTGAAAGATGGGACTTGAAAACAATATCTACTGCCTGTTAGGTCAGGGTATGCCTACTTGTGCTGCTCCCTCCATCGGTTTGAAAGTGGAAGGAGGATACATCCAGCGTATCAAAATGATTCCACTTCCTGCCAAGTTTCTTAACCAGTTCTTACACGAACTGTAGTTTAAAGATATAACCCATTTTCCTGTGAAACTGTTCCTTTTTCAGTATTATAACATGTGTTTTCTGTCTAGATGTGAGGCTGTAGAGTTTTGGTTGGAATTTCGGTTTGGCTTTGTTTTCTTTGTTTCTATTTTTTTAATTCTTATTTTTTAATTTGTTAGCTGGGAGTAACTTGAGATTGTTTGGCATGACTGAAGTTTACAGGATTTGTATTGGAACAAATGGTATCTCTAGAAAAACATGGTGGGATGAGAAGTTTCTTTATTAAAAAAACCAGCCACGTAAACAGACAAAAACAAAAATCTTATCTTTTGTGTGCTGAATAAATGAGGCACCAAGCAAGTGCTTGCTTTTGACACAAGTTCCACAGAAATCATTTTCCATCAGGAGATGGTGCTTAAAATAGTTTTAATTTAGTTGTGCAGCTGGAAACAAAGAGCGTTTCAGAGGTCTGGGTTTGATCACAAAAGCTGCTGCGCTCCCTGATGTGAAGATTTCTGATAGTGAAGGGATTCTTTAATTCGCTCGTGTCTTCAAGAATTATTCAAGTGATTTTATACTGTCCTGAAAAAAAAATGCACTGATTTAAAACAAAAAATATTTTTTTCTCTAAAACATGGAATTGAAAAGCACTCTATTGAATGCATTTTGCTATTTGTATTATGGGGTCAAACACCGTATTTAATATGCATTTATTTCCTAAACCAATGTACGGTCCAGACTATGCGTGTTGCATTCTTAGTTGCTTGTTGATTGGAAGACTGGTAAATATAGCTGTGCACCTGTCGCTGCTGATGCACGTTCATCTGCAGAAGGTAGTACTGCAGATTAAAAGCTGATTGGGACACTAAGAGGAAAGTGATAGCTATGGAAACTGAAAGTATTTTTCCTTGCTCTTGATTTTGTTTGTGTCTTGTTTTAATTTGAGTTTATCTTTGATGTAG
Seq C2 exon
TCGGCAGAGGTATGTTCTTGGAGACACAGCAATGCAGAAGATGGCTCAGTCCCATGTGTTCCTGAGTGGTGTAGGTGGTCTTGGTGTGGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762:ENSGALT00000019202:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0089916=ThiF=PU(12.4=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]