RnoINT0159001 @ rn6
Intron Retention
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23509290-23513126:+
Coord C1 exon
chr14:23509290-23509352
Coord A exon
chr14:23509353-23513031
Coord C2 exon
chr14:23513032-23513126
Length
3679 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCACTGTGCTTTACATATAGTCG
3' ss Score
5.65
Exon sequences
Seq C1 exon
TGCAAGTAAAAATTTACCTACCATGACAACAGAATCTTTGGAAATCGATGATGGATTATACAG
Seq A exon
GTAAGAACCTGAGAGACCGAAACCCACCTTTTCTAATAGAACAGAATCTCATAGACTTTTTGATGGCTGTACTTGTGCAGAACTTCATATGGATATCCTACAAGTCCTTTTAAATTAAAATTGGGATTTTCGTGGGATTTTTTCTCATGTTATATATAGTATGAAAGTTTTAATATGTGAATAACCCCCAGATTCTTGATAGGACTAAGAAGAATTTTACTCTCCAATATGAAAGTAAATGTCTTTTTTTTTTTTTTTCCTTTTTTTTTCGGAGCTGGGGACCAAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGAAAGTAAATGTCTTAAGTTTAGATAATAGGTTTTATTACTTTTCTTGGTAGTATAGGGGTTTCTTTAGTTCTTCAGTCAAATTTATTTTATTTTTATTTATTTTTAGTGAATTCTGGAGAAAATCAATACAGATAATGGAGAAATACATGACAGAGTGTAGTATAAGTGAGATATGGCTTGAATAGGGAGAGTCTTCTACATGCTTGTTTAAAGGTCCCTAATTGGTGGTACTTTTAGGGAAAGGTAGAAACTTCAGGAGTTGGGGTCTAGAGAGAGGAAGGGGAGATGATGTAAAGTGGACTTCAGAAGGTTATCCGTGCCCGTAGTTCCTGTGTGTGTCTGCTGCTGGTTATGCGTTACTCTGGTACATTTGCCACCTGTATGAGACCCAGCAACCATAAATGAACTCTGAAACTGTGAGCCAAATACATATTTTTTTAAAAAGTTTTTCTATCCAGTATTTTGTCATAGGAATGACAGAAATAATTAGTTCATTGCTTTATACTGAAAGTGATCCTAAAGAAACAGAATTTCCTTAACTGTGTTTGTGGTTATTTGGTTTGTTTTAAAGTTGGTTAAGACTCTCCTCCTGATGGTGTTTATCTTAGTAACTTTGTTTTTTATTTTGCAGCTCACAGCTAAGAGTTTACCTTAGTCTCAGAATATGCTATGGACGTAGACTTTTGATACTAGTGTGATATCGGAACTGTTAAGACTGTGGAGGACGAGGCATAGTGTTATATATGGTTTGACTATGAAAAGTCCGTACACAGAGTTAAATGCTAGTTTCCCAGCCGGTAGTGCTACTTGGGGAGGTTTCCTCCTCCTACCATAGGTTCCAAGGATAAAACTCAAGTCACCAGGCTTGCGCTGAGCACTTTATCTGCTGAACCATCTCACCAGCCCTACTTTTTAGTTTTTACTTCACTGAATGTAATTACCATTAGTTTTATTCTTTTATTTAACTACATAATTATATAACCACTTGTTATATATAGTAATTATCATAATTTTATAAAACCATACGTTAGTATGCTTATTCTATTGGAAGATTCTTACATTTAGTTTTATGCATGTGAGAAATTCACACTGTATCATTACTATGACTTAAATAGTTATCTTTGAAATTTCTTAAGATTAAAAACATGTGTTTATCCATACTTTTTATCATTTCTCATTCTCCATGCTTTTCTGTAAGTTCAGATTCTTATGTCGTACTGTTTTCTGCTTTAACTGGTTTATAATTTCTTATACAACTTTATCAGGTTTATATGTTTAAATATAGAATGAAGAAGTCTTTATTTCAATTTTTATTTAGAGAAATTTTGTTGTGAGTGTGGAATTTCAGATCACTGTGTTTTCTTCTGAAAATACCATGATTCTGATTCCCAGGGAGAAAGACAGATGGTAGGTACTCTTAATCTTTCCACCTTACATAATGTTTTACAGCTCTTAAGATTTTATCTCCTTTCTTAGGTGTGTGATACACTATCCTGGAACTCTCCTTATATCTCTTGTTCACATAGTAGTATCTGAGTTTAGTGCTCATAGAAAAAAATGGTCATTGGTCATTCATATTATTTTTTTTCTTCCCTCCTCTCCATATTCTGTTTTAGGAATTCCAGTTTCACATATATGAAAGAATGAAGTACCAAATGAAGTACCATAACTTTCTCGGGCTCTATCTGTTTTCATGTTGGGAAGTTCATTTGCTGAACTTAGGTTGTTGTGGTGAATATGTCGTTAGTTCCATCCAGTCTGTTTTGATCTTAGATTTGTAGTTCTCTGAAGGTTTTTTTGGTTAGGATTCCCTCGCCCTCTTGAGCACATGGATCATATGTATAATTGATGCAGTGTTGTTGTCCTTTAGTTCAGGTGTCTGTATTACTTCCTGAATAGGCACCTGTTGGCTATATCGAGTTCATTATGGGGTGTTTTTACCCACTTTTGTGTACCTCATGACGTTTTTATTGCTATCAGATATTGTAGACTTTTCGTTTTTGGATTCCTAAAATATCACCCCACCCCCACCCCCGGAGCTGAGGACCAAACCCAGGGCCTTGTGCTTGGTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACCCCATAAAATATTCTTTAGCTTTATTTAAGAGTACAGTTAAATTAATTGAAACGTTGTTCCTTTCCTAGCTTGCATTTAAGGTGAAAACCACAGGAATCTTCAGTTAGTTGGAGCAAAATTTTCTTCATTATATATGTAATACTCTTAATACTGAATCTAGTGTCCTTTATACTGTGAGGTATTTTGTGCTTAACTTTACTTATTTTGTGCTCACTTTAGGATTTTCCTCATATGTTTACTAACCTGTACTCAATTTAAACTGGAGAACCTGCTGCCTATTTCTGGTCCTCTGCTTTAAAAATCCTAACGTTCTCTTATTTCCTTAAATCTTTTTTAATATTTGTTTACTTCTCTCTCTCCTCTCTCTTCTCTCCCACCCCCCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGAGTGTGTGCGTGCGTGCTCGCTCAGGTCATGGCATGTGTGTGAGGTCAGAGGATAAATTGTTGGTTCTTTTCTACGCTGTGAATCTCAGAGATTGAACTCAGGTTGTCAGACTTGGTGACAGGTGTCTTTACTTGATGAACCATCTTCTGACCAAATTCTAGCTTCTTAGATTTATAGCTCTTTAAATTAGGGAGATTACCAGATTCTAGTTGCATTTCCCTCTCTTGCAACCTAGAAATTCTTTAGATCACATCTAAAATAGGCCTGGAGCATGATGGGATTACGCAATCTTTCAATGTGTAACTTAACAAGATCCAACTAAGTAGATCTTACATCTTCGATGCAAAATAGAACTCAAGAATTGCTTGGCCAGTTCTCTTTAAAAAACAAAACAAAACAAAACAAAAAACCCCAAAAACCTCAATTATCCCCTCAAATCCTGTTTGTTATCAAAATTGAGGCTAGCAAAGTTCCAGGCCTTCAGTGACCCCTGAAGCAATGGATTGAGAGGAACAGGAGGGAATGGAGCGGCTACCGTCTACCTAACATACTTCCCAAAGAGGACAGCTTCTGCTCAACTCTGCTGCGTTAGGATGTCGATTGTGCCAAGTGACATCACTTTTCAAAATGTGCTACTTAGTTAGTTAGCTGGCAGTTCAGTTGGTTAACTTAAATGCTGTACAACTTATCTAAAATAATGCTGGACAGAGTCAAGTCTTGTGGTTGTTGGTTTATGAACTTTAAGGCAAACTTTGATAAAATAATTATTTTCTTTTTCACTGTGCTTTACATATAG
Seq C2 exon
TCGACAGAGATATGTTCTCGGTGACACGGCAATGCAGAAGATGGCCAAGTCCTGTGTCTTCTTAAGTGGTATGGGTGGTCTTGGAGTGGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931:ENSRNOT00000037509:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0089916=ThiF=PU(12.3=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]