GgaINT0070374 @ galGal4
Intron Retention
Gene
ENSGALG00000010566 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:38015921-38020543:-
Coord C1 exon
chr4:38020425-38020543
Coord A exon
chr4:38016056-38020424
Coord C2 exon
chr4:38015921-38016055
Length
4369 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CAGTTCCTCTGTTTCCACAGATA
3' ss Score
9.38
Exon sequences
Seq C1 exon
GTGCCCTTTCTTGTCAATGGCAAACTGTCAGTATGGCTGCGATGTGCTGAAAGGGGAAGTGCGCTGCCGCTGTCCTTCTCCAGGCCTGCAGCTGGGGCCTGATGGTAGAACCTGCATAG
Seq A exon
GTAAGTGATCAGTTGTGGATTTAATATTTAATATATACTTTTTCCTCATAGAATTTTCATCCTTACCCTGAATGCATTTAAAAAGTTCATCAGGTATATTTAGAATGCAATGTACATGTAGTTCCAAGAGGTGACTAATGAGGATGGAGATGTATTGCTCAGCTGTTCTCAAGTGGTCTACACCAGAGATGCCTAGTGCTTTCCTCCAGTCTTGCAGGTTTCATTGGCTATCTACTTAATGTCTACGTGAGCTGATTGGCATCCAAGCCCCTGGCCGTTACTACTCTCTCCTGTTCCTGTAAAGTATTGTTTACCTGTAAGGTAATTGTAAAGTATTGCTAACAGAACCTCTAAAGTATGTCTGCATGAGGAAGGACAGGGGAGGGCAGCTGTCTCTCATACCTTTCTAGAGCAAGGTGATGCCCAGGTTCAGAGAGTAGAGGGATAATTTGTGCACATCTTTGAGATTTCCCAGAGGCAAATTAAAGGTCTCTGCTCACTCCCAGTATTAAATAGGATTTAGGCTCCCGTCTTTCTTGTGTAATTGTTAAAATAACCTCAGGAATTCAGACTATATGAAAACGAAATGTACTGTTCTCACATTACTGAACATGGAAAAGTTGCTCATGGTTAATCAGACTGTATTGTACCACACATTACTATGGTTTAAAGAACAGTGTGACATGTGATTTCATTAGTCATTAACTATACATCCTGTGTGGATACGAGGATACGATGCTCCAGTGATTTTATTATTTATATCTATGCAGTGCTGCAGTTCCATAGCCTGTAGCGACACTGTAGGCTGGCAATAAAGGAATAGAAAAGTGTGAATGCCCTAATAATCTGAAACTGACTTAACTATCTGACCAAGAACTTAGCAGCAGAGCAAGGGACAGTATCTAGATCATCTGATGTGAGGAGCAGGCTTGGTTCTAGGATGGATGCTTTTTGAAATGCACAACTAGCGTGTCCATGCATACAAAAGAGAAAATAACCATTGTCACATGCTGAAGAGATTGCAATTAGTGTCACGGCAGACATCATGGCAGGTAGATATCTTTAAGGTGAAGAACTGTGTACCTGTGTTTCACTGTGTTGACCATTCAGACTGGTATCATGACCTATTTTTAAAATCTCCTACAAAAACATCAGAACAGGCTTGCACGATGTGGAGGAAGTAGTCTTAGCAAGAGATGGCTGTCCTTCATGGGTCAAGAAATGCTCCATCTCCCTTTTTTTGTATGAAATGATTGTGACATGGATGCTTTCTAAGTAATTTCTCTGTCAAGCTTAAGTTTTGCTAAACCAGTAAATAATACCTCCAAGAATCAAAGTTATTTGTGGCCAGAATTTTGTCTTTTCCTGACATGTGCTCAAGCCCTTCACACTTGTCAGCTCCAAGGAGTGCGCAGATACTGCTGCAGTGTAGAAGCAGTAGAAAAACAACAGTGTAGATGGTAGTAAGAAAATTGAAGTGTGCATTGACTGCAGCTCGTGAAATCCTAGTTTGAATAGAGTTTGAAAGACAGCTGAGAATTTAATGCTTATTTTTAGCACAGGTTTAAATTCCTCTAGACATTATTCTATTCTTAGTTTAACCCACAGAGATCATTCTCTTGTTAAAATGTTCCTTCCAGCCAACCAGTGTAGAGCAACCAAACAATTCAGCTAGGAAGGCAATTCATTGCAACTAGATAACAAAGAAATAAGAAAGAATTCAGCAAAGTATTCATTGAAAATAGGGATTGACTAATTAATGACTCTCAACTCAATAAATCCGTGTTCCCAGCTCTTTGAAGTAGGTTTGGTATACATTTTAGCTTTAGAAGGTCTGTAGCTATTTGAGGACTGAAAATCATAATTATTTTTATTGTAAAAGAAAGTCTTGTTAGATGTTTTGCTTGTGGATGGAAACTTAAAAATATAGCCTCGTAAACTTAAAAAAAAAAAAAAAAAGAATATTTTAAAATCATCATCATAGTTGGTTAGTACTTGGGTTGGTAAAACGGCCCTACACGCAGAAGGAGAGAAGCAAGTCTGTTTGTAATCCTGCTTCTCTACTGAATGCTGGCGCTGACAGTCATTGGGTGCTGCTTGTAGTATTTGCCTTTAGAGCAGCCACTGGCGCTAGGTTTGGGAGTGTGCCTCCATCATAGACCAAGCTGAGATCAGTATGCAAATCACCCCTCTATGCCCCGGTTTTCATGGGCAGCAGGCGTGAGCCACAACCTGCTGCAGCAGGCAAAGGGGAACTGCCTTACACTGTTTGGGCGCAGGTATGAATTGGTACAGCTCTGTGGGTTTGCAGGGAGCCGCCATCACTGTGTTATGTGAGAGCCATAGGAGGCCAGCACTTACCTTCCAACTTCTACCTAATGGTCAGAAAGTTATTTGCACCAGTAAAGAGCATCCACTCCACTTTCCATATTACATGCAAGCAGTAGACGTGTCAGTTTTCAACAAGGTATTGATGAGCAGTTCAGTCCTATACCTTTTGGATGTATTATTGCCTTGAAAATTTAACAATGCGACAGCATCCAACATGCTTCCTTCCTTACATGAATTTGCGAATATGTGAATTTGTACGGAAGGAAAGGCGTGTAAAAATATTAATAAGGTACTCACAGCCTAAAATGTTACCAATTCAGACCAAGAGGCAGATTTATAAGGAGACTCAGGCATGTGGAGAGGTGCCCAGCATTGGCCTCATTTTCTTTCTCATTCAGGCGTGTACTGCAGAGTGTGAGCAGAGGGGAGCTGTGCTGTCAGAGCAGTCTGATGGGCCAGGGGTGGGAGCTTGAGGGCCGAGTCCTTGCTGTCCTCCGTAATTCCCTATACAGGGTAGGACAGTGCCAGCAGCAGCTACTTTGAGAGTCTGTCCAACCAGTAATTTGTGGCTTTAGGTTACTTTAGGTTACCAGCGGATTTGCTTCTTTTAGTTCCCCATTTGAATGGTTCTTGATTAATCTAGAATATTTGAATATGCCAGAGCACCTCAGACTCAGTGCTAATGTTTCTTCTGTGCTACGTAAGAAACTCGGACTTCTCTGTGCCTTATTCAGGCCTCTCTCACAAGCATCAATCACTCAACTTTGTTTCGCAGTCCTGACACTTGCAGCTGAAGAAAAAAAAAAACCTTTTCAGAAAAAAAAAAATGGCACAGAGAGCAAAATCTCGCTTTCCCATAGATTGAGAGCCTGATAGAGGTGCAGAGAAAAGGCTTGAACTGTGCCCTGCAGATAACCAGCAAATGTCAGAAGCAGTGTGCGTCAGAGGCAGCCGTGCGTGGCAAGTCCCTACCTCAGAGAAGAATTAGGGTTCAAGTACTAGGAAGACTTCAGCTCAGTTTCTGAGGGCTATAGAATGAGCGGTAGTGTGAGCAGCTTTTGGGTATCAGCCTGCTCTCCTGCTGCGAGCCCTGCACGCTGTGAGAGCAGGCTATGTTGGCACCTGCCTGATGTACTTAGCATGAAGCAGCAGCTTCAGGGAGCTGAGAAGCATCAGATGCTGGATGAACATCACACATCTTTCCAGAGCTCTGTCCTTACTTAGATGTTGCTTGATGAGACACTACTTCAGGTGCTGCTGGCAGGGCAAATATAAGCCATGCATCTCAGCACCTTCGATATTTGAAGGTCACCTTACACACATCTCCATGAAAGAGGGGTCAGCTACAGTGCTGGGTAAGAACTTGCAAAGCAGCAGACAAAGTGTTTGGCCTGTAGTGACCAAGTGGTAGTTGACCCAGAAACACTGCACCTTTGGCCTTAGCTTGAACTCCTCGTTGAGAGCAAGTCCTGAACAGATGAGGGTTTCTGATAAGCTCACTGAGCAGGCCGTGGGTTAGGGATGCTTGAGATCTTTGTAAAAGCAAGCAACCTTCTATCACATGATGATGTATTTGGAGTAGGTACGTATGGCCTGTGCTACAGGAACAATGTTTCAGGTGTGTTTGGAAAAACAATTACTGGGGTATTTTTTATTATTAGTCCTCACCTATATCCAAGTGCTATCTTAGTAGCCATGCAGGGATTAATGGGAGAAAAGTCATACAAGTAGCATGACAAAGCTTTTCTTCAGCCAAATACCATTACAGTTTTAAGGATGAATATTTTGAGGAAGGCATTTTCTTGTCACTCACTGTACTTGGGAAGGCTTCTGGCCTGGGAACTGTAAGAATCTGGGCACATGGTTAAGAGCTAGACTGAGGTGACACAGGCAGAAGACCAGCTTGCATTCAAAATAATATTTTCATAAGTACTTTGGCTATTCTTCAGTTTTCACAATGTGAAAACAGTTTCATGTGGGTTGTATAGATTGCATTTTACCTGTTACTAAGAGTAATGCAGTTCCTCTGTTTCCACAG
Seq C2 exon
ATATCGATGAATGTGCTACTGGGAGAGTTATCTGTCCACGATTTAGGCACTGCGTCAATACTTTTGGAAGCTACATGTGCAGGTGTCATAAAGGCTTTGATTTAATGTACATTGGAGGCAAATACCAGTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566:ENSGALT00000017193:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=82.9),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]