GgaINT0070622 @ galGal3
Intron Retention
Description
NA
Coordinates
chr4:34403164-34404401:-
Coord C1 exon
chr4:34404200-34404401
Coord A exon
chr4:34403275-34404199
Coord C2 exon
chr4:34403164-34403274
Length
925 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTTAATTTTCTGTTAGCAGGAC
3' ss Score
6.12
Exon sequences
Seq C1 exon
CTTCCTCCGTCTTATGAGCAGGTGATAAAGGAAATAAATCAAGTGCAAGTGAATACAACAAATAACAATAATGCTGCTGCTCCTAGACATACCACTACTTCTGCAACACAAACTGACTTTCCAGAGGAATTAATCAGCCATTTGCCAGAAAGTAATGTAAAAAGTGGTGTGCCTACACACTGGGAATCTACAAACTATCCAG
Seq A exon
GTGAGATCTTTTTGAATTCCCATTGATGAAAATCCTAGTTGGTTTCCTGAAGATGTTCTTTGTTATTCATCTCAAGCTGTGCTAGGGAAGGTTCAATTTGGATATTAGGAAAAAATTATTCACAGCAAGGGTTCTGATGCACTGGAAGGGGCTGCCCAGGGAAGTGGTGGAATCACCATCTCTTGAGATGTTCAGGAAACGTGTAGGTGTGGCACTGAGGGACATGATATAGTTGGCACTGTAGCATAGAGTTGACGGTTAGCTTAGATGATCTTAGAGGTCTTTTTCAACATTAATGATTCTAACATTCTGTCATCTGTGCAACAGTTGTCATGAATAACAGTTACATTTCTGTGAATGATTGATACTGTAAATTACTGCAAAACTCCTCTTTTCTGAAGTATCATTGCATTCACCTTTAGACTTCATTTAAAACTTCTCTAAGATGAATAAAATCATGTGTCGTTATGACTTTGTAATAAAAATCTTTACTGTTTTGCTCAATTCAGCCATATTGGCAGTTTTGTTCCAGTAGAGCTCACATATCTAATCAGAATAACAGCAGTGTTACACATTCAAACTGGAAAGTAACTGTCTGGATGTGTGTAATACTCAGCTGAGGGAATTACTGTACTGTTCTTTGGCCAAGATGTTACTTGTATACCCTTCCGGCTGCAAGCTAACAAGTAATTTTGAATTCACAACATGCAGATGCCATGCATTTCAGCAATCTTCAGTTTCTTCGTGGAGTTTATGTATTTTTTCTATTTCTCTCTTTTGAAAGAGAGTTTCAGTTTCACAAGCAGCACTGTGAACACAGTTCTGAGCAAAAACTATTGTTTCACATTCTTATGGCCAATAGAAAAGTAATATAAATACGGTGTTCTATAATAGGTAACTGAAACCTTTAATTTTCTGTTAGCAG
Seq C2 exon
GACCGAGTCCCCTGAAACCTCCTAGGCCTTCTGCATCTCTCTTGAACAGATCTTCTTCAGAAAATGAGACTTTCTTAATAGTTCGTGAAAATTCTGAAGGTCAAAGGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023360:ENSGALT00000038482:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCGTCTTATGAGCAGGT
R:
GGCGCCTTTGACCTTCAGAAT
Band lengths:
311-1236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]