HsaINT1041465 @ hg38
Intron Retention
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151174670-151176687:-
Coord C1 exon
chr4:151176525-151176687
Coord A exon
chr4:151175675-151176524
Coord C2 exon
chr4:151174670-151175674
Length
850 bp
Sequences
Splice sites
5' ss Seq
CAAGTAATT
5' ss Score
3.86
3' ss Seq
TTTTGTTTTGGTCTCGTCAGCAC
3' ss Score
5.18
Exon sequences
Seq C1 exon
CTCCCACCATCTTATGAACAAGTTATAAAAGAAATCAACCAAGTTCAAGTTAATACTACAAATAATAATAATGCTGCTGCTACTCCAAGGCACACTATTACTTCTGCAACTCAGACTGACTTTTCAGAAGAAATAGACAACGATCTGCCTCAAAGTAATGCAA
Seq A exon
GTAATTTGTCTTCCCTAATTCTGACCTAGTTCTAGGGAAGTAATCCGTAGGCTTCCAGCCTTTAAAATAATTTGCAATTTGTGCATAATTCATTGAGCTCTGCTGCCCAGTCAGTGTGATCACTGTGTGCTTGCTTTATTTGGGTGTGCAGTGATGATTATAATAGATCATTCTTACAAACTGCAGCCCCAATCTCTTGAGCTTACCCTAGTTTATATCACAAAAACATTATCCGTATAATTCATGGTGGGTATTACCATTGATTCCCTTTATTCCCTCTGAGAAGGATCTTATATTTAGCAACTTATACTTGATAGGATGCTAAGGGTGGTTGTCCTGTTAGGCTTTTTTAAAGTGTTGCACTGTGGCTTATGCCTTTAATCCCAACGCTTTAGGAGACTAAGGCGGGTGGATTGCTTGAGCACAGGAGTTTGAGACCAGCCTGGGCAACATGGTGAAATCCCATCTCTGCAAAAAAATGGAAAAATTCGCTGAGTGTGGTGGTATGTGTCTGTAGTCCCAGCTACTCAGGAAGCTGAAGTGAGAGGATCGCTTGAGCACTGGAGGGTGAGGCTGCAGTGAGCCGTGTTAGAGCCACTGTACACCAGCCAGGGCAACAGAGCAAGACCCTGTCTCAAAAAAAAAAAAGTGTTATATGAAGAGCACTCCTACAGGAAACAGAATAAACATTTCCATTTTTGAATCACTTTTTACTAATTAAAAGAAACCAAAATCTCTTGATATTCCATGTATGTAGTTTTAAATCTGTGTATCTTCTATTTTTTTCCTTATACATTGTTAACGTTATGGCTTGTTTTTATTTGTTTTGGTTTTGTTTTGGTCTCGTCAG
Seq C2 exon
CACTACAGGCACCTCTCAAGCCTCTTCAGCCTTTCTCAGCAGTCTCGTCTGGCAATCTTCCAACAAATGTGGCACCTTTAATCGTCTTTGATATTTCTGAAGAACCGAATTGTCCAGAAAACCCCAGTGCTACAAGATGTCCAGTGCCAAAACCAAGATCAAAAAGCAACCTCAGACCAATACCCAGAGATTCTCACATTAAAGAGCAAAGTCAACAGAAAATCAGCCCAGCAGCCGTAGGAGAGGAGTCATCCCCAGGCCGGCCCCAGTCTCTGCTGGACAACGCTAGCACCTCAGACAGTCAGGCAGTGATGAACATTATGAACACAGAACAAAGCCAAAATAGTATTGTTTCCAGAATTAAAGTGTTTGAGGGTCAGACAAACATAGAAACCTCAGGACTGCCCAAGAAACCAGAAATTACTCCACGTTCACTTCCTCCAAAGCCTACTGTTTCCTCAGGGAAACCTTCTGTAGCTCCCAAACCAGCTGCTAACAGAGCTTCTGGAGAGTGGGACTCTGGGACTGAGAACAGACTCAAGGTGACCTCCAAGGAAGGACTCACCCCATACCCTCCCCTGCAAGAAGCGGGAAGCATCCCAGTAACCAAACCTGAATTGCCAAAGAAACCAAACCCTGGCCTTATACGAAGTGTTAATCCTGAGATTCCGGGAAGAGGGCCCCTGGCTGAGAGCTCTGATAGTGGGAAGAAAGTGCCAACTCCTGCCCCGCGGCCTTTGCTGCTGAAGAAATCTGTTTCCTCAGAAAACCCCACCTACCCTTCAGCTCCACTGAAACCTGTCACTGTTCCTCCCCGACTCGCAGGGGCATCACAAGCCAAAGCATACAAGTCACTGGGAGAAGGGCCCCCAGCCAACCCCCCAGTTCCAGTTCTGCAGAGCAAGCCCTTGGTGGACATCGATCTCATCAGCTTTGATGATGATGTTTTGCCCACCCCATCGGGGAACCTGGCTGAAGAATCTGTTGGTTCAGAGATGGTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686:ENST00000409598:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGCTGCTACTCCAAGG
R:
GGGATGACTCCTCTCCTACGG
Band lengths:
349-1199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains