GgaINT0073923 @ galGal4
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
phosphodiesterase 5A, cGMP-specific [Source:HGNC Symbol;Acc:HGNC:8784]
Coordinates
chr4:54090151-54092261:+
Coord C1 exon
chr4:54090151-54090218
Coord A exon
chr4:54090219-54092152
Coord C2 exon
chr4:54092153-54092261
Length
1934 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
AATAATATTGCATCTTTCAGGGA
3' ss Score
7.23
Exon sequences
Seq C1 exon
GATTCATTTTCTAGTGTTTTTCATATGGAAGCTGAGGAATTAGAAGATTCAGCAGAAAACCAGAAGAG
Seq A exon
GTAAAACAATGACATTAACCTTTTGTTAACCACTGGAAAATGTTGAAGAAATTATGTTTTTAATATTATTTTTCATAATAAAGGACCTGCGTGCCATTTCATCCCACATCCCAGCTACCACATATTTCTGCTATCAGTTTTGGAGCAGATTTGTCCTGAAGCATACATAAACAAATTGTCACATCGAGAAGTCTAGGAGAACAAGGCCTGGTCTCTTCACTTTTTCAAGTCTAAAGTTCATTTTTACAACTCAAGGGTAGGCTACAACTCAAGGAATATGACTGACAAAATCGAAAGAAAAGTCCTAAAATTCTAACTTTCACTCACCTTCAAGAAATGACTAAGAATTTAAACTGGAAGAGAAAGACGTAAAAATAATTGAATTCAAACATTCAGATTACGTAGTTGGCAAAATTTAATCTGAACCTCTCTATATTTAAGTTTTGAAAATTAACTGCCTCCATAACCTGTCTGTCATCACAAGCAGTTGATACCAATAGTGTCAGAAGAATGAGACACAGTCCTATCAAAAATACAGTACTACAGATGTCGTGTCCAGAGAGAAAATTAAAATTTCAATACCTTTGTTCTTTTTTTTAGTGAACATTTCTGATATGAGTTTTAATTATATGTATTTGAAAATGAACTCCGAAGTGTGTGGCTAAAGCAAATAACTCTCAAACTTTATTGGGATTTTAGACAGTGTACAGTCATAAAGTACATAGGTACAAAATGGTCATAAGATCACAGGATAGCTGTTAGGTAAAGAGACAGAATTTACCTTCCTGTTTATTATCCTTTTTATGGTTACCAGTTGATGTGCTCAGAATTTAATTTACTGCTTGCATGGACTGTCAGTAAATTATTTCTCATAATTGATAGGGATGGAATGCTAGAACCTTAGCTGCATATCTGAATTTAGTTCATGAAACAGCACAGTTACATGTCATGGACTATGAGTCAGCCACTGGAGTTAGAACTGGTGCTTTGTTTTAAGATCACATTATCAGGCAACAGAAGAAATCTAATTACATGGATTAGATGGGAAGTGTTAGTTTACAAGATATAATTTCAGGCTTATTACATAATCAAGGACCCTGAATCAAGCCCAAATCAGACTAGCATTCAGAATTTTGGGGTATTGCCTTATATAACCAAGTTGGTGAAATAATGGAAGAATAATTTTCTCCCTTTAGCACTGCGAACGTCTTTTGCATGTGCACTTGTACCAGAAGGATAACTAAAGTCAAGTCAAATGTCAGAGTAAACTGTAGGAGCTTGATAATAATACATGCATCACTAGGACATACGCCCTCCTCAAATGCTGGCAAAGTGTTCTGATAGAGTTGAACTCTCCTAATTAAAAACTTCATGTCTACAAAAGCAGGAGATGATTGATCTTGTGAAAGTATTTTATGTCTCAATTTGGAAAAAAAACATCTCTATTCCAATAACAGAATCCCTGTACTAATTGTTCTTTTAGAACAATCTTGAAATAAACTTTGACGTAGAAACTTCACAAGTATTACCAGCTGCACTCAGCCTAAAGAATATGCATGTCTCATACAATATTGATTTTTCAGGTGTGTCGGATTTGCAAATAGCTTGTTTTAAGAGTTGTTTATTTCAGTGTAAACCCAGTTGCTCATTCTTTGTCCCTCATCTGCATGTCCTGTATTATTTCTTAAGTTTGACATTCAGTGTTAAAAATTTTGGAATATTGAAGAAATGGTGCAGTGTATAAATGAATCCTCCCAGTCATTTTGCAATGACAGATGGATTAGTGTACAGGATTTGAATTCAGTTCCACTATAATGCTGTTGGTTATATCTTCCTTGGCCCTATCCATGAAGGATATTTACAATTACCTGCTTTGCATAATGAAATGACTTGATGTCATACTAAGCACATAAAAATAATATTGCATCTTTCAG
Seq C2 exon
GGACTGTGATACAAACAAAATCAATTATATGTATGCTCAGTATGTCAAGAATACAATGGAGCCTCTCAACATCCCAGATGTCTGCAAAGACAGAAGATTTCCCTGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(14.0=100)
A:
NA
C2:
PF0159021=GAF=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]