GgaINT0073927 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56230484-56235023:+
Coord C1 exon
chr4:56230484-56230543
Coord A exon
chr4:56230544-56234876
Coord C2 exon
chr4:56234877-56235023
Length
4333 bp
Sequences
Splice sites
5' ss Seq
GCGGTAATT
5' ss Score
6.84
3' ss Seq
GTTCTTTTGTTCTTCTCTAGGCT
3' ss Score
10.85
Exon sequences
Seq C1 exon
GTTCTCTCATACCATGCTTCTGCTGCTGAGGAGGAATCAAGGGAGCTGCAGGTAACAGCG
Seq A exon
GTAATTGAATTTTTTCCTATTTCTTTTGAAATATTCCACTGATATAACAGTGAAGGTGGTCCTTCACACAGATGTGATCCCTACACATGCAGAAGCACACACTTTCCAGAAATAACAATTACAATGAACCTAACATTACAGTGTACAGAGATCTTATGAGTTTAAGTGACAGCAGCAGTTGATGGAATAATGCTATCAACTCATGATGATGAAGTGTTGCAGAAGCAGAAAAAAAACCAAAAATCTTGTGAACTTCTGGCAGCTAAGTCTGAGTTTTGTATATTTTATATCTTTGGTATATTTCAAGCTTCTCAAGCATGGATGCAGCTTTATGGCCTATGACAGAAACTCAGCATTTAATTATTCTTATGTTTACTTTTCTGTGCAGTGTCCCATTGTGCTCATGTTTAATCCTGTGTTTACAAACCATTGCCTTAGGAGTAACTACAGCCATGATTTCAAGTATAGTTCAAAGCATATCTTGTGCTTAGTCTCTGCTGTTCTTTCTGTTGGAACACAATGTTCTGGGCAAATTGCATCCCCTCTAGTGTGACGAAGACAATGAAAGTGGTGGAGAGATGAAGAGGAGATAAAGAAAGGGGACTGCAAAGGGACCGCATAGTATGGGACTGGACAAAGCAGGGTGCCACAGAACAAGGCACAAGACTTTGGATAATTTTGGAATGGTTAGTGTTGCACACATTTTGAGCCTCAGTTCTACCACACCATTACTTTCTGATAAAAAGGCACTGGCAAGAATAGTATAGAGTAGTACTCTATGCATCTGCAGTGGTTTCTTTTAAGGCCTCTATTGCAGTCCCTGTGGTTGCAACTATACTGCTGAACAAAACAGAACCATGCAAAATGTAGCACTGAAGCAGTGTTCATTTCTACTGCTTAACTGCCCATATGACTCCGACTACAGTTCTTGCCCTTTTCAACCACCACTTAAGGTTGTACCAGAGCACACAGCACATGCTGTCTCCAACAGCCTGTGTAGATGAGTGCAATAGATTTGGATTCCTCTATCTTACTGTCTAGCAGCACTATCTGAGCAGGTTTCACACCCTTAAATAAACCACATATCCTCACATTACATCTCAAGGCATGAAACACATATCTAAATTTTCATGCTATGAAACTATCAACTTTAACAGAGTATTAAAATTATTTCAGATAATTAGCTGAAAAAAGAAAATATGCGCTAAAAAAATGATATCTTAAGACTTCAGGCCAGCACATAGATCCCAATGCAAATGAATCACCAAACACTATTTAGAGTAAACATGTCAATTTGTGGTGTTTGGCCTCATTACCAGAGAATGGACCGTGTTTTTTTATTTCTTTGGTGCATGCTTAGTCATGGAGAGGATTTTGTTCAGTAAACCTTTTTCCTTTTTCCATCAGTAGCCAACATAGATCTCTGTAATCTTTCTATTTCACAGAACAAACCTTTATTTCCAGTGAACCTCTACTTCGAGAAAAAAAAAAAAGAAAACTGCCTGTGACTTAGAATACGTTAAGAGGGAAAAGACATATTCTATAATCTTTCTAAATTGGAAAAACGTCAAGACAAACACTTCCTAAAATTGTGCTCAACATATTAGAGACAGTCTACTTCCTGTAATGGACTTCTCAGCCAACTTTGATTTTGTGTGGGATTTGTTGCTCCAGCAGGATGCATATATAAATGTATTGGGCTCAACAGAATTCATCCCAGGGTACTTAGAGTTGGCTGCTGTCATCACAAGACCTTTCTCAATTAGTTTTCAACAGTCTTGGGAATCCAGAGAGGTCACAGTCAACTCAAAGCTCGCAAACATTGTCCCAGTTTTCAAGAAGGGTGATAAAGATGACCCTGGTTATTACAGACCTCCCAGTATCACTTCAGTTCCTGGCAAAGTTATGGAGAAGATTATTCTGGAAGTCATTGAAAAACACCTGAAATACAACACAGTCACTGGTCATAGCCAACACAGGTTCACAAGGGGAAAATTCTGTTTAACAAACTTCATCTCCTTTTATAACAAGGTTACTCACCTAGTTGACCAAGAAAAGCCAGCTGATGTAATTTTGTTTTTCAGCAAAACATTCCATACTGTTTATCACAGTATGTTCTGGACAAAATGTCCAGCATACAGGTAGAAAAAAAAAAAAAAAAGTAATATGATGGGTGAATAATTAGCTGATGAATTGGGCTCAAACTGTTATAGTAAATGAAGTTACATTAGGTTGGCAGCCCATCACTAGCGGGCTTCCACAGGGAGCCATTTTAAGGCTAGTTCTCTTCAGTGTTTTCATCAGTGACTCAGACACAGGACTTGAAGATATACTAAGTAAATTTCTGGACAACACTAAATTAGGAGGAGCTATTGACTCCTTTGAGGGCAGGGAGGCCTTGCAAAGAGATCTTGACAAATTGGAGGGCTTAGTAATCACCAACCACATGAAATTTCAAAAGAGCAAGTGCCAGATTCTGCACTTCGGATGAGACAACCCTGTACAGGCTGACAGATATGTGGCTGACGAGCAGACTCACAGAAACAGATATGGGGATTCCAGTTGATGGCAAGTTGAATGTGAATCAGCAGTGTACTGTGGCAGCCAAAAGGGCCAGCTGTACCCTGGGATGCATCATGCTCAACACTGCTAGGCTGGTTGAGGGAAGGGATTGTCCTGTTCTGCCCTGCGCTGGTGCAGCCTCATTTTGAGCACTGGGTGCAGTTTTGAGAACAACAATATAAGAAAGACACAAAGCTATTAGAGAGCATCCAAAGGAGAGCAATGAAGATGGGAAAGGGTTTAGAGGGCAAGACATAAAAGAAGCATCTGAAATCCCTTGGTTTGTTCAGCCCAGAGCAGAGGAGGCTGAGGGCGGCTGCAGCTCCTCACAGGGAGCAGAGGGATAGTGCTGATCTCTGCTCTCTTGTGACAGTGATCTCTGCACTCTTGTGACAGTGACAGGACCCAAAGGAACAGCATGGAGCTGCATCAGGGGAGGGTCAGGTTGGAAAAGATTCTTCACCAGAGGATGACTGGACACTGGAACAGGCTCCCCAAAGCAGTGGTCGTGGCCCCAACCCTGCCGGAGTTCAAGGAACATTTGGACAATGCTCTTAGAAATGTGGTTTGATTTTTTGGGTAGTCCTGCGTGGTCCCAGGAGTTAGACTCAATGATCTTTGTGGGTCCTTTCCAATTCAGGATATTCTATGATTCTAAGACTTGTAATTCTTGTAATTTCCCACTTACCAGTGGGAAAAAAATCGAGAAACTCTCCTGATGATAGTTCTAGATAGAAAAACTTTCCTAAGCATGCTAATGCATGATGATATATATAGTTATCTGCAGAAGATTAAACTGATTCAAACAAAAAACACTCCTGAAATCTTCCCAAAGCTACAAACGATATCAGTAATAAACCCTGTACTATCCACCTTTTTTTCTCAGGAACCTGGAAAAGAGATAGGATCAGCCATTTTGTATTGTCTGAACAGCAAAAGGAATTTAGAGTACAAGCACCCACATGGAAAATACCTTCCCAAAAGCTACCTTTTTCTTCCATAACAAGTTATGGAGAACAGCATATTAATTTTGAACTTGTTTTGCAATTGCCTGGAAAAATGGGAGCCTCATACAGGGAAAGTGATTTTTTTTTAATGTATAATACAGCATAAGACTTATCATTTATTTTGTTGACAACTTTAACATCCATACTTTGGGCATTCAATACATATACTAAATTTTATAACTGGAAAAAGTACAGCTGTAATATACAGAGATGTGATGAAAGATATAATAAAAGTTAGAGATTTTAAAATGTACTGAGTTTTTTGCATCTACTTTATAATTTCAAATCAAAGTTGTGTGATTGTAATCAAGATACATTAAAAACATTGTTCAAAAATTTTAAAGATTATCTGATAACAAGTGAACCCAAATTTTTCAGATTTTTAGCTCTGAGAATGCTCTGCTTGTGGACATGTTCTAACTACCACAGTAGTTGGACATGGATTCCGCCACTGTCTTTTCTCAGTCTCTCAATTTCATACATACTCTTTGTTATGGTTTCTCTTGGGTGACTTAGGGAAGACTTTTTGATCATGTAATACTTTCCTTATTCTTTTGATCTATGGAAAAGTGTTCATTAAATCAAAGAAACAAATGAGGCAATCTTAAAGTGGAAGAGCTAAGGAAAGATAAATGGGAAGTAATGATCAGGTTTAAGCATAATGTGAAGGTAAAATGTAGGATCTCACTACTTGTCTGTTGAAAAAGCATTTATGTTATGCTTTCTCTTTTCTACTTCAGTTTTGTTCTTTTGTTCTTCTCTAG
Seq C2 exon
GCTGCTGTAGTACCATCTGCACAATCTCTCAACCTAACTGACTTCAACTTCAGTGATTTTGAGCTATCAGATTTTGAAACAACACTGTGTACAATTCGAATGTTCACAGACCTCAACCTGGTGCAGAATTTCCAAATGAAACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]