Special

GgaINT0075165 @ galGal3

Intron Retention

Gene
ENSGALG00000015623 | E1BZN8_CHICK
Description
NA
Coordinates
chr4:84955136-84957486:-
Coord C1 exon
chr4:84957312-84957486
Coord A exon
chr4:84955222-84957311
Coord C2 exon
chr4:84955136-84955221
Length
2090 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCTCCTGTGAATTCATTAGAAA
3' ss Score
3.92
Exon sequences
Seq C1 exon
TTCCTAATCATCACTGCTATCGTGGCAATGGCACTGAGTACAGAGGTACAGCCAATACGACCATTTCTGGACATAGCTGCTTGCCTTGGAATTCAGACTTACTCTACCGGGAGCTTCATGTTGACAGCGTTGAGAAAGCAGTACAGCTAGGCTTGGGGCCCTTCCCTTACTGCAG
Seq A exon
GTGAGGAAGTTTGCCCTGTGATTATAAAACAAGAGGTGGATGGGTATATTGTGGGAACAGATTTGGAAGTGAGAAGGGGCAGGAATATCAAAGCAGATGCCACCTTTGCCTTGGAAAAGCTGGGCTGGCTTAGCAGCCTGACACAGGAGGTAAAAGTTTCTAGAAGACAAGATCTGGGAGGTTGTATGGATCAAATGTGGTTCAGCCAAGAATCTCAGATACAATCTCATGTTAAAAAATTCTGATGCTTTTTTTCCTGGATTTTTTTAATGAGACCTTAGAAAAAAATATATACATTGCTCAAAAATGGCTACCCAAAAGGAGAAAGAAGTTAACCATTAAATTTGCATAATGCATTTACTTCAAATTATGATATTGTGGAATTTTTAATACAAAAGAAAATATTTTAAAAGTGGAAAAAATCAAAGCCACTTTTAAATGTGATGGGATGTCAAATTTCTTTAAAAGAAAAATGGCTGCGAAATCAAATTTTGGCATTTCAACTTTGATCAAACCACACGTATGATAAACGTTCAAGTTTTGCATTCGGTTCTAATGAAACCTTTTATGGCTTTTTCCTGTCACTTTATGTTCCCCTTGTCTCTGAGTTCCTCATGAGGTCAAAGGATATCTATAAATAGAATAAATGTTTCTATTAGGGGCCATCCTAAAACTGATAATCTTAGGTACTTCTCCATGAACTGCTGTCAAATTGTTTGTTGATAAAAAGCATGCATGCATGCTCAAAGTAGCTTTTCTTCTCTATCAAAAACAAACTAGCAAACAATTACTATTTTCCCCTCCTCCCTGCCAAATCCAAATTGGCTTGCTTTCAAAGGCTTGGTATGGATTCGAACACTTAAGTATGAAATTTATGGTGTCCCAGTACACCATGGCAATTTATTGGGCATGTATTTTGTGCTTTGATAAATCCTGATCCCTTCAATTTGCTTCATTTAAGCACAATATTCACTTGCAGATTTCAAATGCAAATAATAAAACAGTATAGGAGCTGATGTGTTAATGTTCTGTAAAGCTGAGAAAAAAGCTTTTCACTTTTTTGTCAGCTTGTTATAATTTCTGGGGATATCTCTGCTGTACTATATAATCTTTCAGATATCTTCTTCTTCAAATAGTCTAATTTAGAAACGTTGGTGGAAGATGACTCAACCTGTGTTGCTTCTTCAGTTCTGAAAATCTTAAAGTGCTTTAATCTTTTTTGAATAGCAGTCAGATTAAAAAAAATATTGAAGAATCTTAAAATAACACATAATACTTTTGATAAATCCAACTGAAATTAGAATTACTGTTTATCCAAAGTCCTGAATTATCTTGTCTATTTTTATTGGCCTACTCAAGATCTTTCTGAATCTTCAAAGTTCTATACTCTTGGAGGACTAAACTGGTCAAATTTCGGGTTACTTGTGCAGCACAGATAAAGGCAATTCTGCTGTACCACAGAGAAATCATAATGGGATCAACACCAAAGTCGTCTAATATCAGAGTAATAAAAGACTAACTTGATTCTAATATTGCCTTTTGAGGAATGTAATATTTTCTTGAAGTAGTCTCTCATTTCCTCAGATTCTCTCCAGGGAATATGAACTTGAGTATCTCAAATTAGCTTTTGCTAGCTATTCTTGTTATGGATTTTCTATGAATCTACCTGTGGTGGAATTTCCTCACTTAAAAAAAATAATCTAAAAGAGGAATCTCTCCCATGGGACTCAGTCCTGAAAATAGCTCAGCTAATATCTGTTGTAGCACTTCAGTGTAGGCTGTATTTAAACCAAGTGAACATGCTCATGCATCTGAATACTTGCAGGAAAATTCTACAGATGTTTAGTCATGTTTCTGCATTTTAGGTCCTAATGAGCTTTATTTTTGGCTAGCTTTAAGCATAAAGTTCCCTACTGAGGGGATCCCTACTCACCCATTTAGATGTTAGCAAATTCTTCTCAGATGGCTCCAAAACAAACAATCCTATCAGTCCTTTGCATGGTGCAATAGGAAAAAGCAGAAAACATCTGGGAAGCTTGGAATAACAGTGTGGTTAATGAATTTAATTTATTCTCCTGTGAATTCATTAG
Seq C2 exon
AAATCCAGATGAAGATGAGAAGCCATGGTGTTACATCATGAAGGACAACAGTTTGTCTTGGGAATACTGTAACATTCCATCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623:ENSGALT00000025185:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0005113=Kringle=PU(64.6=89.8)
A:
NA
C2:
PF0005113=Kringle=PD(34.1=93.3)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]