GgaINT0075165 @ galGal4
Intron Retention
Gene
ENSGALG00000015623 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:81505387-81507737:-
Coord C1 exon
chr4:81507563-81507737
Coord A exon
chr4:81505473-81507562
Coord C2 exon
chr4:81505387-81505472
Length
2090 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCTCCTGTGAATTCATTAGAAA
3' ss Score
3.92
Exon sequences
Seq C1 exon
TTCCTAATCATCACTGCTATCGTGGCAATGGCACTGAGTACAGAGGTACAGCCAATACGACCATTTCTGGACATAGCTGCTTGCCTTGGAATTCAGACTTACTCTACCGGGAGCTTCATGTTGACAGCGTTGAGAAAGCAGTACAGCTAGGCTTGGGGCCCTTCCCTTACTGCAG
Seq A exon
GTGAGGAAGTTTGCCCTGTGATTATAAAACAAGAGGTGGATGGGTATATTGTGGGAACAGATTTGGAAGTGAGAAGGGGCAGGAATATCAAAGCAGATGCCACCTTTGCCTTGGAAAAGCTGGGCTGGCTTAGCAGCCTGACACAGGAGGTAAAAGTTTCTAGAAGACAAGATCTGGGAGGTTGTATGGATCAAATGTGGTTCAGCCAAGAATCTCAGATACAATCTCATGTTAAAAAATTCTGATGCTTTTTTTCCTGGATTTTTTTAATGAGACCTTAGAAAAAAATATATACATTGCTCAAAAATGGCTACCCAAAAGGAGAAAGAAGTTAACCATTAAATTTGCATAATGCATTTACTTCAAATTATGATATTGTGGAATTTTTAATACAAAAGAAAATATTTTAAAAGTGGAAAAAATCAAAGCCACTTTTAAATGTGATGGGATGTCAAATTTCTTTAAAAGAAAAATGGCTGCGAAATCAAATTTTGGCATTTCAACTTTGATCAAACCACACGTATGATAAACGTTCAAGTTTTGCATTCGGTTCTAATGAAACCTTTTATGGCTTTTTCCTGTCACTTTATGTTCCCCTTGTCTCTGAGTTCCTCATGAGGTCAAAGGATATCTATAAATAGAATAAATGTTTCTATTAGGGGCCATCCTAAAACTGATAATCTTAGGTACTTCTCCATGAACTGCTGTCAAATTGTTTGTTGATAAAAAGCATGCATGCATGCTCAAAGTAGCTTTTCTTCTCTATCAAAAACAAACTAGCAAACAATTACTATTTTCCCCTCCTCCCTGCCAAATCCAAATTGGCTTGCTTTCAAAGGCTTGGTATGGATTCGAACACTTAAGTATGAAATTTATGGTGTCCCAGTACACCATGGCAATTTATTGGGCATGTATTTTGTGCTTTGATAAATCCTGATCCCTTCAATTTGCTTCATTTAAGCACAATATTCACTTGCAGATTTCAAATGCAAATAATAAAACAGTATAGGAGCTGATGTGTTAATGTTCTGTAAAGCTGAGAAAAAAGCTTTTCACTTTTTTGTCAGCTTGTTATAATTTCTGGGGATATCTCTGCTGTACTATATAATCTTTCAGATATCTTCTTCTTCAAATAGTCTAATTTAGAAACGTTGGTGGAAGATGACTCAACCTGTGTTGCTTCTTCAGTTCTGAAAATCTTAAAGTGCTTTAATCTTTTTTGAATAGCAGTCAGATTAAAAAAAATATTGAAGAATCTTAAAATAACACATAATACTTTTGATAAATCCAACTGAAATTAGAATTACTGTTTATCCAAAGTCCTGAATTATCTTGTCTATTTTTATTGGCCTACTCAAGATCTTTCTGAATCTTCAAAGTTCTATACTCTTGGAGGACTAAACTGGTCAAATTTCGGGTTACTTGTGCAGCACAGATAAAGGCAATTCTGCTGTACCACAGAGAAATCATAATGGGATCAACACCAAAGTCGTCTAATATCAGAGTAATAAAAGACTAACTTGATTCTAATATTGCCTTTTGAGGAATGTAATATTTTCTTGAAGTAGTCTCTCATTTCCTCAGATTCTCTCCAGGGAATATGAACTTGAGTATCTCAAATTAGCTTTTGCTAGCTATTCTTGTTATGGATTTTCTATGAATCTACCTGTGGTGGAATTTCCTCACTTAAAAAAAATAATCTAAAAGAGGAATCTCTCCCATGGGACTCAGTCCTGAAAATAGCTCAGCTAATATCTGTTGTAGCACTTCAGTGTAGGCTGTATTTAAACCAAGTGAACATGCTCATGCATCTGAATACTTGCAGGAAAATTCTACAGATGTTTAGTCATGTTTCTGCATTTTAGGTCCTAATGAGCTTTATTTTTGGCTAGCTTTAAGCATAAAGTTCCCTACTGAGGGGATCCCTACTCACCCATTTAGATGTTAGCAAATTCTTCTCAGATGGCTCCAAAACAAACAATCCTATCAGTCCTTTGCATGGTGCAATAGGAAAAAGCAGAAAACATCTGGGAAGCTTGGAATAACAGTGTGGTTAATGAATTTAATTTATTCTCCTGTGAATTCATTAG
Seq C2 exon
AAATCCAGATGAAGATGAGAAGCCATGGTGTTACATCATGAAGGACAACAGTTTGTCTTGGGAATACTGTAACATTCCATCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623:ENSGALT00000025185:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(64.6=89.8)
A:
NA
C2:
PF0005113=Kringle=PD(34.1=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]