GgaINT0077025 @ galGal3
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
NA
Coordinates
chr4:64961905-64966146:+
Coord C1 exon
chr4:64961905-64962037
Coord A exon
chr4:64962038-64966036
Coord C2 exon
chr4:64966037-64966146
Length
3999 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
AGATTAAGCTTATTTTACAGTTT
3' ss Score
2.92
Exon sequences
Seq C1 exon
CTCAATGCAATGGCAAACCGAGCAGCAGGGAAGGGATATGAAAATGAAGACAACTACTCCAACATCAAGTTTCAATTCATAGGCATTGAGAACATCCATGTCATGAGAAACAGCCTGCAGAAAATGCTTGAAG
Seq A exon
GTATTACTGCTCTTTATTTGAATACTAAGGAAAAGATTAGACACAAACTAGAACTTTTCTGAAATCAGTAATAGAGAAAACTTTACCTGCTAGCTCATGGATTTGTGACATTGATCATCATTACATTTAGAAGCATTTTCCTAATTGCAAAAATTCCTTGTTTCATGAGTAAAATCTAGATAAAACATACGCTAATGACAAATGTAATTTGACTTTAGTACCTTACTGCTACTGCTTCTTTGTGGTTTACAGTTTGATGGTTCAATGAAAAAATTGCTTATATCTGGCTACGATGGTGGTGGAAAACATAAAAGACTTTTAAAAAGCCTTTAAATAAGACTTTAAAAAAACAACCTCAAAGCATAATGGCTTGAGGCTTTTTTCTTTGGTCTTTGCAGTTTAAATTTTAACAGAGATTTATTCATTTTCTGTATAGAGCATGTCATATTAGGGCTATTTATGAAATAGTCAATCTGTATTCACATTGACATTCAGCACCTTCATAATCCCACATAAGTTAATAATAATGGCTTTATAAATAACTAGTGCATAAAGCAGCACAACTGTACTACCATTTATTATTTGAATTACATTACTGCTAAGAGGCCTTCTTGGAAAAGGATAAGGATAAATAAGCCATCCTTGACCCTCAGTTAATTTGTTGATTTTTAACAGGCAAATAATAAGTGATCGCTCCAGCCCACGTAGTCTCAGTATTTACTTCATGTACATCGTCAACAGAAGATTTCTGAATGTTCACCTCCTCAATCAGCATGATCTAGCTATCCTTGGCTCGGTGCTCTACCCATACCCCTTTATTCTATGTATCCCATCATCCATGTGCAAACGTGAATCCTAAATCTAAGAAGGCCATAGGGAGATTGTGTTTCCAAATAAGAGCAGTTTTTGAAAACCAGAAGCAAAGTGTGATGCATGTGAGCAGTCTCTTGTTGCTTCTCATTTCCTGTAGAGATGGGCCATCCCAAGAGGAACTGCCCACTCCCCAGAGAAGTGCTGATAGGATTACTGCTTTTTGATATATGTAGTGTCTCTGCCAAGTTTTACCCTCCCGTGGGACTAACAAAGAAGGCAGGCACAGAAATTTACTTTGTCCTGGCCTCTTTGATCACAAATGTTTCTAAGTCAGTCTGAGTGGACTTCTGTGGTCCCTGGTCTGTAACCATGCTGTTCAGATGAAGGAGGAAGGTTTTTGGCACATTGCTCTGTGCATTACAGATATGACTGTACTCAGACCTACAGAAGATTTTAGGTTAACATATGTTTAGTACATCATGGTGTATTCTTGCTTAGTTACTTGAAGTGTGAGGTCTCGGGATGGAAAGTAGAAGGTTTTTTAGCAAACTGCAAAGCCTTGTTTGGCTAGAACAGAGGTCAGATGAACAAACCCATCCCGTTGTTTGCTCAGCTTGAGATCAGCAAGGTTGAAGCAGTAAACAACTGTCCTGGCTGCACATGATAGTGCTATGTATTATTTTAGAGCCAGAAGTTCAAGAGCTGGGCTCCTGGCCCAAACCGAGAGGTAACAACTTAATTCCCAATAAATGAAATGAAACAGTGTTGCCTGGGGCAGAACTTCCTAGCATCTGTTGCAAACATCTTTGTTTTGCTTTGTTTTCTACTGGATTTGTATTTGTTGTGTTGAAGTCTCATATTTAGAGACCTGACTACAAGATCAGAAATTAAAGAAGTGACGACTGCAATACTTGAGACTTTTGCTGAATCTTACGACTTTCAGTGCATAAGTAGGGCTTCTCTCATGTAAGGTCCCAGACAGTTCTTCTCTTTTTTTCCATTTGTGATTTTAACTTTAACTCTAATAATCTTATTTCTATTAGCTTTAACATGACTTTGTTCCAGTACAATATGTTAATTTTAACAAAAATTTGTAGTAGATTATAATATAAATTATTAAATGTAATATTAAATTGGTAGGATAATGAATCATTTTTTAGAATATACAAAAAAGTTGGGATTTCACTTTAACATGGAGGAGAAATCCTTTTCAAGCTGCTGAAATTTCCTTCCAGAAAACAATTGTTTTCTGTTGTCTCTGCTGCCTCATACTGCTTTGTATAATATAGAATTTTATTCTTTAAATAGAGGTGTAAGTGATGGCACATGTGTTAATTTTGATCCCGTGCACAACTTCCTGGGCATAATTCTTAGTATTAGTAGGAAAAGTGGTACAAGAACTTCTCACTGGAAAGACTGAAGTGCTGACCAGTTGTCTGGTATTTGTGATGACCTCTATCCATGGGCTCTTGATTTTCCTGTGCTCAGCCTATGCGCTTTCCCATGGCATAGGTGCAGGAGGTCTTATTTCTCCTAGGTTCTGCTATCAGGTGGGTTTGTTGTTCTGCTGGAAAAAGGGTACCAAGTCTTTTTTTTTTTTTTTTTTTCTTTGTGCTGGTACCAATCTTTTTTTTTTTTTTTCCTATTGAGACAGAAATTCCTTTTTTTCCCCTTAGGAATTCATATCTGGACTCAGTACTAAGGTCCGGATCAGTAGCCAAAATCATGTGAAATATAGGAGTGTGCCTTTAGTTTAGGACAGTCTGAACTTTGTTCAGTGAAGTGGTAGGTAAATATTGATTCCAGTTTGGTAGTGGGAACGAGCAAAGCACTATTTAGCTTTACCTTGGACTTTTGTAAACAGAGACAGCAGCTTCAGTCAGAATTGAGCTACTAATAGGTCATGCTTCCATCTGCACAGAAGCATTAATCATGTTAAAAGGTGTTTGCTCTCAGTGTTGCTATCCATGCATTTTTATAAATACCCTTCAGAAATGACTTTTAAAATCACCATCTGGAAGAGACCCTATGTACAAGGATTGCAAGATTTCATATGGACGCATTAGGCTACTTTGCTTCTGAATTAAAAGGAGTGAGGACAGCTGGATGCACTCAGATGTGATATAAACTCTGAATTTGTCCTGTAAAATGAAATTTTGGTCATGTAGAAAGAAATGGAATTTTTGCCACAGATGAAAATTAACTGAGCATTTTAGAAGATGCTTGGAGACATAGTAAGACATTATTAATTCACAAGTAATACATCAACTCAATTAAAAAAAGACATTATTTCACTATACTCCATAAATAAGTTTCATCAGTTAATGTCTTTTACTTTGCGACAGTATAAGTGTACATGGGTCGGAATAAATGTGTAATCTATTTATGTGGTGAATTTAGTATCTCATACCTGAGAACAGATCACACCAAGTATTGCTGGGTGTTTGTTGCTGGAATCAAATATCTAACTTAGATTTGGATTGCCTTTTTTATTTCTTGTGATGTAACAAACTCTGTAATATTAAAAAATAGACAGTTGAGTATTGTAGGATAGAAATTTAATGTTGTGAAAGCTGAGAGAGATTTTTTTTTCTTTAATCATGGTGTAGAGCTAGAAAAGTTTTCAGCGAAATGTTTTCCTTGTCGAGTTATGACTTTTCCTCACCTTTAGGTGGTGTTTCCTGGCTGCATGACAAACTTTAAAAAGGTTTCATTGACAGACAAGGAGCCATTGAGTGAACTGCTTTATCTAAAGCACCACTATATGTGGTGATGCCAAAGGCTGGAATAGTGGTGCTGTTCTTCAAGCACTTTCTTAATTCAGCTTTACCAGCAAATGTGGGTAGGATAGGAGACTGGGGCATGATTCAGTGATTGTCTGCCTGTCCAGTGGCAGGAATGTGTGTATTTTCTGATTCTATGCCTTCAGTATTAAATAGAAGTCCCTCTCTCTAAAGAGTTTGAAAACTACACTCATAACACAACTGGGAAACATGTGTTGCTCAGAAGGATGTATTTGGTAAACTGACTGCAATAGGCTTCCCAACAGCTTTTAAACTGACGTGTATGTACCTGGGGAAATTGGAGACAGCCCTCTTTCTCAAATGCATGAGAAAGTAATGGTAAAGTTTTGAAAGCATAAGGGACTATATTGACTGTGCATTTAAGATTAAGCTTATTTTACAG
Seq C2 exon
TTTGTGAAATGAAATCACCTTCAATGAGTGACTTCCTGTGGGGCCTTGAAAATTCTGGCTGGCTGAAGCATATCAAAGCCATTATGGATGCTGGCATCTTTATCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]