GgaINT0077289 @ galGal3
Intron Retention
Gene
ENSGALG00000014419 | Q90XG3_CHICK
Description
NA
Coordinates
chr4:77773982-77777652:-
Coord C1 exon
chr4:77777629-77777652
Coord A exon
chr4:77774133-77777628
Coord C2 exon
chr4:77773982-77774132
Length
3496 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTGACTTGACTCTTCCACAGGCA
3' ss Score
7.8
Exon sequences
Seq C1 exon
CTAAAGAGCAGTATTTCATTCCAG
Seq A exon
GTAGGTTTGGCTCTGCAGTAAGATTGACTAACTGCAGATACTCTCCCCTTTTTCCCCAAAAAGCAGTTTGTTATAGCTTTTAGGAAATTGATGCATGTCTATTAACAAGAGTGAATACCTATAGCTAGACATAGTTTTCTTTGTAGATTACTAGTAGTTCTGTTTTCTGGATAAGAGCTTAGCATGCAGCTCCATTTATGTTTTTGTCTTACAAATTTGCACACAACCTACCAAAATTTGTTCACTTAAATTTTGTAGAAGGCTGTACCTGCTAGTTGATATTTCAATTGATGCCTTTATTTGCCATCTACCTTGCCTTTTCTGCTACTACTGTTTTTAAAATGTAGCTCCTGAGCTGCTTTTAAACACAGGAAAACCTACTTCTGTCAAAGAGCTAGTACAACTTAAAACAGACTTTACAAATGAATGTTTTCTTGCCTTGCTTTCATACTTTACACTGTCTTCAGCTACTGCTTGCTCACTCTCCTCATGTTTGCCAAATCACAGTGGAATGCTTGGAAAAGAAAGCTGATATTCATTAAAGGCATTCTGTGGTCACATGCATACAGTGAATCAGAAATGCATTCCCTTAAAGAAAATATGACTTTTGAGTTGGGTTGAAAGAGTAATTTACACACTGCTTTCAGCTACAATGAGTCTATGATATTTTCAGGAAAGAGTCACTTATGTTGGCCCTAGCTCTTTGAAATATGTTTCTTTATTTATTTTACCTTGCTTGTCAGGTGTGTGCACTGATTTCTTAATAGAAAAAAAGCAATGATGCTCTTGCATTATTTTCCTAACAGATTACAAATAGTTGTTTGGCAAAATAAACAAAAGAATAATGAATCTATTGATAAATTACAGAAGGTTATATGCAAGCAGGATTTTCTGCCATAGCGTAATATCCAGAAAAAATATCTACAATAATTGATTATGACACCAGTGCACTTGTTCTTTCAAGTATTACAGATGTATTGTCATTCTGCAGTGTCTGAAATACTGATTATTGATTGGTATTTATCTTTTAAGCTGGTGTGCTAGCTCTTCTAATGCTATGTGATTTATTACTTAAATTTGCCGCAACTATGTGAGTTGTTCATGCCCTCATACTAACATGTTGCTTAGAATATTAAGAAAAGAAAACTTAAATACAAAATAAGGGAGTCATTTGTCAGCATTGGCAGCAACAAAAATGTGTTTTAAAGCAGCATAAAACAGAGGGGGATTCACTTTCTGAAACCTGTAGTTACCACTCCATTTCTTAATGAGTAGAACAGCTGTATTCCTGCCACAGAATGACTTCTACTCAACTTTGCCAGCACAACTTTTTTCTCTGAGTTAGAATTGTTTTCTTGCCAGCAAATGTCTTCACAGCTTGTTTATACTATGGCCACACATGCAGCTTAGATTTGTTTATGTACCCTTTAAAAATGCTTTTCCTGCAAAAAAGAAGAGAAAGAACAGAATTAGTCAAAAAGTGCTACAGATTTGCTTCTTGAAATAGAGCTTGCGTGCTTTCTCTTTCCATCAGGTTTCAGGGAGATGCTGCATGAAATTCTTCTAACTGTTGAAGATCTTGTCCCTGAACATTTTAGTTTTTTTACTTTGAACTACTAACAGTGATTTATTCTGGAAACAGGAGGAAAAAATGTATTTGTAGCTTTGCTCATGAGTATTAAAAAATGCTCAAAATACTTATTTATGGTTTATTAAATACTGTAAAAATGTTTAAATTTCTTTAAAAGTCAAACGTAATTTCTATATTTGTTTTAAAACGTCATTGGGAGATCTTATTCTGCAGGTGCTAAGAATTCTTAGTAGAATTTCAAGATATTAATCTGGAAAACTAAAGGCTAAATAAGTATTAAATCAGGAATTTGAAAAGAAATAGTTTGTCTACTAGCTCATAGAAATATTCTGAGCAGCTAAATCATGTGTTACTTAGACATTTGCAAATGCTAGACGGAATAATAAATGAAGACTGATTTTTTCCTCTCATGAGGTATCTGCTTCTCCCATGTTTCTTTGGTTTATTAAGTATTTTAAGTGGCATGGCATGTATATATGTTCAAAGGAGCATAACAGCTTCTAATGAACACATTTAAAATAATGAAGAATAATGCATGGGAGATACTGCGTTTCTATATGAAATTCCTAATTAACCTCAATCTTTCTTCATTTTTTTAATGCCACTTAAAATGAGTTATTCTTTCTCTCTGCTGAAGGTGGTACCCCTTAGCAACATGCTCTAATCAAACTAAATTTGAGTTGGGAACATATGAACTTAGTTCATGTTTTTGTCTTAATTGGGATTACTCTGTCTTTCTTTCCTTCTTGGCTATCTTTACTTTTGCAGGAGTTCACCATTTTGGCTGTAAGTAAAGTTCAGTGTCTGAGCTAAATCACAATGTACCTCCCAGCCCTGATGCACCTTCTACTAGTCACAGTCTTTTCACCTTTGTCCGAGAAGAACCCACAGGTCCTTTCAGCTTCTCTTTGTTTTCTTTGTCACCTACCCTCAGTTTCTTACTGGATGTTTTCTCCTGATATGTTTAGGACGTTTTCTTTGACTGACTCTGGGAAATGGTGGAGGAAACTTTCAATGTGGTTCTTTATTTTTTTTCCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGAATTATTTAATCTGTGACAGTAATACTGTTACTGTGGCACTGGACATTCAGTAAAAAGAATGCCATGTCATGTAAGCAAGTATTAATCTTCAAATGTTTCTATAACTTATACCTGCTCCTTCCTCTTTTCCCTCACTGTTACCCTTGGCCTAATGGATGCAGTTTTGATAATGTAGCGAGATTTTCTGTTGTGCTTGATCTAACCATGTGGTTGTGAGGTATGAGTAAAACATGGTTCTGTCAAGCACCATGGAACGTCACGCAGCTTTCTACAGCATGGCATGCTGCTGAGGCTTAAGTCAGGATCACACATTTTCTTAAAATTAAAGCTGAAGATAGGGCTTTCAATCTTACGTGTTCAAGATAATGTGCAGGGTTGGGACTGCAAAAAAAAAAAATCACAGAGGTTAATGAAGTCCTGTTAACAATACAAATTTGTAGCGCGAGAAAGAGAAATGGTGGCATTCAGGATCTATTTATTCTTGCTGCAGAGAAATAAAATAAATTCTATAAGAATCAGTGGCATTTGTGTGATTAGCTATAAACAATGCTAGATTGGCTGACAACACAATCAGCAGAAAGTACAGCTGTGAAAAGCTCAAGTTAATGTTATCCCGTTATGTGAAGTTGGTCAGTTTCTTTTTCCAGCATATCTAAGCCCTTATATTTAACCCTCTCTTGAAGCCCCTGTGTCTGTTCAGTATCACGAAATTTATCATACATTTCCCAAGTTGCCCACCTGTTACCTGCATTGCAGATATCTTTTCAACCTTCTCACAAGAAACAAATCTTATACTTTATTGACTCAGTATCTGTATTTTGACTTGACTCTTCCACAG
Seq C2 exon
GCACTGAAGATTACAGATCCAAATTAAGTGGTGACTGCTTTGCAGATTTGGCTTGCCCTGAGAAATGTCGCTGTGAAGGGACCACAGTGGACTGCTCCAATCAGAAACTCAACAAAATTCCTGATCACATCCCACAGTACACAGCAGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419:ENSGALT00000037317:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0146213=LRRNT=WD(100=54.9),PF127992=LRR_4=PU(2.4=2.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]