GgaINT0078177 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GFS4]
Coordinates
chr3:89754969-89757060:+
Coord C1 exon
chr3:89754969-89755030
Coord A exon
chr3:89755031-89756947
Coord C2 exon
chr3:89756948-89757060
Length
1917 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TACCTCCTTTACATTAATAGGTG
3' ss Score
7.63
Exon sequences
Seq C1 exon
TACAAGCAGCAAAGTGAATGCCACATTCACTGAAGCATCCAGCCTACAACTCAAACTGTCAG
Seq A exon
GTAGGTTCAGAATTCAATATTACAAAAAGAAAAGAAGCAGTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTACCTGTCCAGTTTTGTTTTATTTTCTCCTTTACACAAATGAAGCAAAATCCCTTTATGTTTTCTCTACGAACTTTTTACTGCTTATTTTGCAAACAGAGAGGTGATAAATAAAGCAGTAACTTCAGCAGAGATTTCAGTCAATTTTTATGTGGCTACTCAACAATTTTTCCCCTCGCATTTCAAATAAGTAATGAAATGTTTTTTTTTTGTTTTGTTCTGTTTTTTGTTTTTTGTTTTAATCCTGGACTTCTCGGTAGTATTGATCTTTGAACTCACGGGTAATATTGAAGTGGCAGGCAACGTGTATTTTAAGAATTTTGAGAATTTGTTTTAAGATTTGTAATACTGCAAGGCTCCATTACTCAACAGTGATTAATGTCTGCTTTTATACAACTTGGTCTTCAAGCTAGTATGATGTGCAGTAGATGCAGATAAATCAAATAGCTTAATACATTATGCAGACCTTTTAATCAACATCCTGTATTTCTTTCAACAAATCTGACTCACGTTCTGATCTAGCCTCTGTCTCACTTCAATTTATAGGAGGGAGAGAAAGTGCTTTAATATATGTATAGCCAATGTGAGATTAAGAAACAATGGTTCAAATGTTGGTCTGACCAGTTTATTACAAATCTTAATCAATCAGGGAGATGGGGAAGGGAAGACCGGTGACTGTTACAAATTAGGGTGATGGGGTAGGGAAAGCAGGTGATAGGAAAGGTAGGAGAGGAGCAAGAAGTACGTAAAGCAGGGATAGTCACCACCAAGATTCAGCAGCATCCCACTGCACGACGTTCCGATGGTCCAAGGCAAAAGCGCGGGGGGAGAGCAGCATAAGCATGGCCAGCCTTAGGCAGCATGCAGGCAGAGCACAGAGCAAGTCCAAGAGGAAGAGATGGGTCTCACGTTGCAGGCCCAGGAGAGTCCGTCAGCATTCAGGCATCAAGTCATGAGGCTTCTGATGTCAGACACCTAGCCTCAAGATTGTTGGTTCCTTTTTTATCCTTCTTCCAACATGGCATTCTTGAATGCTTGGGTCAGAGCCATGTGCAGTACCCCCTGAGATGGCTATCTCCCTCAAGATAAGCCCACACAAAAGACTGCTTCCCAACCATTAATGCACGGCTTATCTCTCTCTCCCTCTGTTGCCCCTGGCCTGCAAATCTTCAGACAGAAGATTTTGCCAACTTTGACCAGGACTTGCCTGGACTTGTCCATCTGTGTCCCTCAGACAAAGAATTTCCCACCCTTTGCCCAGGACCTGTCCATCAGTGTTCCTCAGCAAACTTTGAGACAGTGGTGCGAAAAATAATCTCTTACAGCCTTTGATCACAGTTATGTTTGTAATGATCGCTGTCAGCTATCAGTACCTTCTAAGGACAAAAGTCCAGATATAGTTTGGCTACCATATAGCACATTTTTGTTCTCTGTACCACTGATATTTATCATAGCAATATATTGTGATGTGAGTAAATATAAATTTGTCCAGTTCTAATTGACAGTTATTTTAGAGAGGAAATAGTTATATTTGTATTCAGAATTATTGAATTAGTGCATGAAAAGACAGATATTCTTGACCATTTATCTACACAACCAAGCAGTACAAAAACATCTTTGCATCCTGTTATCAAATACAACAAAGGGAAAGATCATTAAAATAAGATCCTGTTTTTACCGCACTGTAAACCTTTCTTATTTTATCCAAGTTATAAAACTATGTTAATACAGAATGTTTTCTACAAAATATTGTACTTTTAAAGCAATGCACTAGGCTTTGAAAGCAAATTTGAACAAACTGATTCAAAAATTGCTTAAAAGGCATATGATACCTCCTTTACATTAATAG
Seq C2 exon
GTGTTTACAAGAAGGAAGAAGCCCATTTGCTACTGAAAATTTTTCAGATCAAAGGATCTAATGACATTTTCACAAACAAGTTTGAAAATGACAACTGGGCACTAGATGGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027412:ENSGALT00000044629:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]