GgaINT0078178 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GFS4]
Coordinates
chr3:89756948-89758074:+
Coord C1 exon
chr3:89756948-89757060
Coord A exon
chr3:89757061-89757986
Coord C2 exon
chr3:89757987-89758074
Length
926 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
CCTATTTCTGTGTATTGTAGGTG
3' ss Score
10.34
Exon sequences
Seq C1 exon
GTGTTTACAAGAAGGAAGAAGCCCATTTGCTACTGAAAATTTTTCAGATCAAAGGATCTAATGACATTTTCACAAACAAGTTTGAAAATGACAACTGGGCACTAGATGGTTAT
Seq A exon
GTAAGTAACTGGACTGCTATGGATAAACCTTGCTGAGCATAATATTAAGTAATTTGTGATTTTCTATATAACTCTATCTTTTTATATGACAAATATTACATACATCACTCCAGATATCAATGTAGAAATCTCAGTGTTTTTATTTTCTAAACTATGTATATAATCTTCTATCTTCCACACCCCCATTAGAATTTTTATTTCATTAAATTGAGAGTGGAGTGAATCATTACATTTTGCTATGATTTTGCCTTTTTTTTTTTTCATATGAGTGGGAATTTTGCCTGTAGAAAAATTATACTTTCTGAAACGGTTCACTGTCATAAATTTGTAAGATCAAAAGAATTCTCAGTTTAAGAATGGACATGTAACAGAAAATGTTTCACAGAAAACCAGGATGAACCATATTGTATTTGCTATTGCAAGTGTTTACCCATATTGAGATACAGTATAGTTCTGACACACGTTAAATCTCAGGTAAGCTATTTACCCAATACTGTTTCAGTATAGAGGGAAGGGTTGATTCCAAGAGCTGGCATTTATTCTTGAAGAAAATAGTTATTTTCATCTTTGTACTTCTTTGTGTCCTTTGATGCTGTCTATATAAAGTATTTTAAAAATGGACAGAAAATTCAGTGAACTTAACTGTATAATTAATCAATTATATAAATTTAAATTAAAGAATTTTAAAACCCAATATTTACATAAGATATTTTAAAGTCATTCCATGTTTTTTATAAACATTAATAGTGATGCAAACTTCAAATTATAAATGTTCTATAAACAAATTCATTAACATTTTAAGGGGAAAAAAACCATAACAAATCTGTATATCTAAATCAGAAAAAAAAAAAAAAAAAAGTGGATAAATATCCTTATTTCTTTCCAAAATTATTTTGTTTTCTTTTCCCTATTTCTGTGTATTGTAG
Seq C2 exon
GTGTCATCGGGGCTTGAAAGAGGTGTTTTTACTTATCAAGGTGACATACATGGAAAAGACTTTGGAAAATTTATGCTACAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027412:ENSGALT00000044629:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTACAAGAAGGAAGAAGCCC
R:
AGCATAAATTTTCCAAAGTCTTTTCC
Band lengths:
190-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]