GgaINT0080666 @ galGal4
Intron Retention
Gene
ENSGALG00000016263 | EYS
Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21555]
Coordinates
chr3:84968501-84972519:+
Coord C1 exon
chr3:84968501-84968675
Coord A exon
chr3:84968676-84972337
Coord C2 exon
chr3:84972338-84972519
Length
3662 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
CCTTTCACTTACCACCATAGTTG
3' ss Score
6.62
Exon sequences
Seq C1 exon
GTTGCATTTTTGATGTGCAAGTTCGCACCAACATGAATCAGGAGTTCAAATCACCAGGGACTCCAGAAGGTCACCCCAATTCTGGTCGCAGTGTTGGGCAATGTAAAGCCTCTCCATGCAGTTTAATAAAATGCAGAAATGGTGGGAAGTGCATGGAAAGTGGCTCTACCGTTTA
Seq A exon
GTAAGTATAAAAAATTTCTTTCTAGGCTATAGCATAGACTGATCACTAGACTTAATAATTATGATAATTTAGTTCCTTGATGACAGAAGTCTGCAGAAATCTATCATCTTAGCAGAAAGGAGGAAAATCATTGATGGGTTTCATTTCATTTCAATACCCCCACCCCTGGCAGCATTCAAGGCCAGGTTGGATGGGGCCCTGGGCAGACTGATGTGGTGGGTAGCAGCCCTGCCTGTGACAGCGCTTTGGAACCGGGTGGGCTTTAAAGTCCCATCCAACCCAATTCTAAGGTATGATTCTATGAAAAGCAAACCCAACATTTTAAAATTGATAGGACATTTGCTGGGGATCTGTCTTAGAAATTCAGTGGACTGTTCAAGCTCCTGTACAAAATAGTGATTTTAAAGCTATTAAGGCTTTACTACATATTGGAAAATTAACCCCTGAGACACAGCTTTCAATTCCCCTCCCCATTTCTCTTAAGAGCATATCTATATGCTTTTAATTGCAGTAGTGAAGAAATGCTTCAAAAGTCCTGAACAGCAAAATACAACTTGGAATTACTTTCCAATTTTTGTATGTCACAACTGTTGGATCTTGCAGGTTCCTTTCAGAATTATTAAATCCTTAGCATTCAGCCTGTTAGATCTTTCTGAGGAAAAAGAAAGGAGGTGACATTTATGGGGATATTAGGGAAGTCATAAAATCAAAATTGCAACCAGAAATAGCAGAAATGTAGACTGAAGTATGCGCCTCCCATGTGTTTTTCTATACCAATGTAAGTCCTGGCTTCAGGAATTTAACCCAGCACCATCTTCATGTCTGCAAAGTACACAAAACTACCACTAGCAAGATCTAGAGAATATCTGGAAAACAGCTGACATGCTGAAGTAGCAGCTGGTGACTGGGCTGTACTGGAACCTTTAAAATTGCAGATAAAGTTTGTTTTCATCTGGATTAATGTTTTTTATTGCAGATCTCTTTAGGGATTGTTGTAAAATTGGGAGGTTATTTTCATATAGTGGGGTGTGCTCTTTGCTTATTTTTGACCTGTAGTGACCTCCTGCTGTGTTATCCTCCTGCCCTCATATTTCAGGACAGCTATGTTGTCATAGACGATACTTATACAGGCATGTGTGTACCAGTAATGGCCAGTTTCACTTCTCATAAGATAAATAAATAAATATTCAATTTAAAAAAGTATATTTTTTAATTGTCAAAAAGCTGTGAATGTAGCAGGCATATGACTTCTATTGATGTATAGTAGCTGTCAGTAATGTCTTGCTTTTCTCAGCGGAATTTCCCTCTGTTCTTAAATCATCGGTGTTCCTCTGTAAAGCATTGTCCTCAATTTGCATTCAGATATTTTTGTCCTGAAATGAGATTTCCTCAGAAATTTTTCTTGCTGCTTTGAGCTATTTTTATGTCTTGCTTCCACCACTCTGCCAGAAAGTGTGCAGTGCCATTAAGCTGTAGAATCGGTTTCTACAGGGACAATGCTTTGATTTAAATAGAAGCCATAATATACAGCATTAAACTTCACATTCTGGCCAGCATCTGAGCAAAGCTACATTGTTTAATAGAATTAAGAGAAAATATTTGAATAATGAAAAAAGAATTTTATGTTCAAGAAACAGTAATATCTCCCACTATTTCAATTATGACACAAAATTATACACAACAAAAAATTATGTAAGTTTCTGTAAAAGCAATGTCTCCTATTTATTTCCATGAAAACTACAATGTATACAAAGAACATAACAATACTATTTGATAGAGAAAGTTTCCTGCTACAAAACACTATTTTTCAACATAGCCAGCACCATTGTCTATGCATTTTCACTGGCAGTGAACAAGAGTCTACATGCCATGCTCATAAAAATCTGCATAGCTGTCCAAAATATGGCTTATCTTTCATGTCACTGTTGCCACTGCTGAAACACACCACCCACTGTCTCACTGTGCTCACACCCACTGTTTGGTCTCCATAAATGTTCAGCAAATGTCAAGGAGTATCAGTGGGTGCAGTTTTTTTCCACATGGAGGAATTCTGTTACATAGACATCTTTGCTTCCAAGTCAAACTCCATTTTCTCAGACTGCCCTCTGCTGCCATCTGTCACACAGCAACAAAATGCAATGGAATATTGGTGGAAAGGTTCAACCTCTACTTCCATACCACAAATATCTGCCTCTGATGTCATGGGCCAACATAATAAAATAGGAGGCATTCCTTTCAGAGCAGCTCTCGTACATCTAACAAGATTGTCTATGAAGTGCTATGGCTATTGCATGTTCCTGAAGTGAGAGAAAAAGTGTGTTTTTTCTGTACTTTGAACAAAACATCATACATCATGGGTAAGGTTGAGTTTGCTGAATGTAGGGCTATCCTGGCAGTTTAGGTACCCTTGGATAGACCGCTTGTCCTTCAGCTGCATCTTTGAAGAGCTCAGTATTTGTATAATTTTTCTGTCATATCTCTGAGACACATGTGAATCTCTCAGTATTCTATAGCATTTCAAATAGCACTAGCAGACTGGGCTCAGGAAATTAAATCCTATCTTCATATGGTACATATTCAGGGATACTCCATGAAATAAGCTGTTGTTTTATTATTACGTTGGATTTAGTTCAAAACAAATTTCAATGCAAGGATAGAACCAATTTTCAGTGAAAGGACATGCTTTTATAGTCTGTAAGAAAAAAAAAGGCATTTCTCTATTTATTATGTTTTAGATCGATAAAATGTGACTTAGCTTATTTAATAGGATACTTTGTCAGCATTTCATTGTACTCTTTGTTTAAATACCATTAATTTTATTCCAATCTTAATTTTTTCACACTCCACTTTTGCCTTATAGCATGAAGATAAACGGTATTTCATAATGCTCTATTTTCCCAGTGCCTTTGTTTAAAGTCACTTTTATTAAGAGATCTCCTCCATTACTTAGCATCTTTCAGTTCTAATACATGGGAAACTTAAGAAATATATCCAGAAATCTCCAGTAGTTTGGGCTGGCCTGATATGGCCAATACAAGCCTTTATGAATCTGTCTACTGTCCTTCTGGAACAGTAGTCAGAAGCCAGATGGGATACCCCAGGGAGCTTTAGTTGGCACTAAACAACTGCCTCATCTCTGTTGGCCTAACTCATTAGGTAAATTGAGCTTCTCATTGCCATTGAGTAGATACTCATCTTAAATGTAGACACCTGCTCTCAGGTGCACCTTCACAGATTTAGGTGTGTGAATTTGCAGGGCTGAATCCCCAGTTTACTGGTATAAGGAAATTTGTTTGATTTGACACCAGGTTTGACACTTTGCACTTTGACTCATCCTAGTTTATGCAACCAAAGCTTGCTTGAGTTATTTGTGGAGCAAAACACACAGAAAAAATCCACAAGATTTATTGTTTCTTGTGGATATTGAGACTATAATTCCAATATTAAAAATAGTACCTTCTGTATTATATGCAATTTCCTTGCAGTAAGATATCAAAAAAGATAAATGATAAACTTTGTTACTATGTTCTTCTGTTATCTGTTTTGGAGCAGAAGAATAAATATAGGCATACAAGGCTTGAAAAACTTAATTACTTTGTTACTGAAAAACTGATTTCTTTTGGTAATAATGCTGCATTCTTTCCTTTCACTTACCACCATAG
Seq C2 exon
TTGTAACTGCCTGGCTGGATGGAAAGGTGCATTTTGCACAGAAATGGTGACAGTATGTGATCCAGAGCATGATCCTCCACATCTGTGCAAGCAAGGCGGTACCTGTGTGCCATTGCCTAATGGCTACATGTGTCACTGTCCTCTAGGAACAAGTGGTACCTATTGCGAACAAGGTATGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016263:ENSGALT00000026224:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(7.6=16.9),PF0000822=EGF=PU(66.7=40.7)
A:
NA
C2:
PF0000822=EGF=PD(30.6=17.7),PF0000822=EGF=WD(100=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]