GgaINT0081290 @ galGal3
Intron Retention
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52242133-52242726:+
Coord C1 exon
chr3:52242133-52242212
Coord A exon
chr3:52242213-52242608
Coord C2 exon
chr3:52242609-52242726
Length
396 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
AAAAAATTCTTTGTTTTTAGGCC
3' ss Score
8.08
Exon sequences
Seq C1 exon
AAGCTGATGGACAGGTTTGACTTTGGGGAAGAATCTGAACAAAATGAAGAGCCTAAAAAGGAAACTCCCACTTCCCAACT
Seq A exon
GTAAGACCAAGCTGTGTTTCTTAAGGAAAATGCTAAAATTTGTCTGGCACTAATTGAACTTGAGAATTAAATAGAAAGGAAGATGTTTGTTTCAAAGCATATGTAAACCAAAACAACATAAAGTAAAAAGACGTTTTACTAAATGAAATGTATAAATTTTTAAACTTTTTATGTAAGTATATGTGCCAGTTTTTCTGACTTCATCTTGAAGTTAACACATTCTTTGCTTTGTTAGTTATATAACTGTCAGTGATGCAGTAATGATAACAAATGATGTTACATTGTCTGCATCATTGTTATTCTATATCTCTAGTTAAACTTAAAACTCAAGTGTGAATGTCTCTTTATCAACCAGTTAGAGAAAATATGCTTATTTAAAAAATTCTTTGTTTTTAG
Seq C2 exon
GCCTTTAGTACCAGAATCTGTGAACAACTCACTTTTTCACCAACTAGCTGAACAACTGCAGCAACAAAATTTAGAACATCTCAGACAACAACTTCTGGAGCAACAGCAGCCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635:ENSGALT00000022182:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=NA C2=0.850
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGGTTTGACTTTGGGG
R:
CTTTTGAGGCTGCTGTTGCTC
Band lengths:
191-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]