Special

ENSMUSG00000046201 @ mm10

Biotype
protein_coding
Gene Symbol
Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3114972-3198855:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
24.98
85.19
0
Alternative 3'ss
3
chr17:3169327-3169329
+
75.02
85.19
0
Alternative 3'ss
0
NA
+
86.51
74.42
0
Alternative 3'ss
3
chr17:3177090-3177092
+
13.49
74.42
0
Exon Skipping
177
chr17:3167963-3168139
+
99.56
48.29
0
Exon Skipping
194
chr17:3178155-3178348
+
99.1
49.58
0
Exon Skipping
134
chr17:3190147-3190280
+
99.64
41.34
0
Exon Skipping
145
chr17:3191817-3191961
+
99.74
34.95
0
Exon Skipping
69
chr17:3193014-3193082
+
99.1
28.25
0
Exon Skipping
62
chr17:3122053-3122114
+
12.62
33.33
0
Exon Skipping
80
chr17:3169327-3169406
+
99.15
63.2
0
Exon Skipping
157
chr17:3187589-3187745
+
99.64
47.72
0
Exon Skipping
114
chr17:3185761-3185874
+
99.58
54.76
0
Exon Skipping
101
chr17:3185064-3185164
+
99.6
51.18
0
Exon Skipping
113
chr17:3177611-3177723
+
99.58
46.04
0
Exon Skipping
132
chr17:3177093-3177224
+
99.15
48.29
0
Exon Skipping
118
chr17:3171103-3171220
+
99.57
55.8
0
Intron Retention
596
chr17:3185165-3185760
+
2.32
91.62
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000213079 SCAF8 1-to-1
Human hg19 ENSG00000213079 RBM16 1-to-1
Rat rn6 ENSRNOG00000016919 Scaf8 1-to-1
Cow bosTau6 ENSBTAG00000031917 SCAF8 1-to-1
Chicken galGal4 ENSGALG00000013635 SCAF8 1-to-1
Chicken galGal3 ENSGALG00000013635 SCAF8 1-to-1
Zebrafish danRer10 ENSDARG00000100056 scaf8 1-to-1
Fruitfly dm6 FBgn0034598 CG4266 2-to-1