Special

FBgn0034598 @ dm6

Biotype
protein_coding
Gene Symbol
CG4266
Description
This gene is referred to in FlyBase by the symbol DmelCG4266 (FBgn0034598). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (4 unique). Gene sequence location is 2R:21161713..21168659. Its molecular function is described by: mRNA binding; nucleic acid binding. The biological processes in which it is involved are not known. 13 alleles are reported. The phenotypes of these alleles manifest in: chaeta; mesothoracic tergum. The phenotypic classes of alleles include: viable; visible; body color defective; partially lethal - majority die; some die during pupal stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
Coordinates
chr2R:21161713-21168659:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
316
chr2R:21165559-21165874
-
73.67
86.79
0
Exon Skipping
273
chr2R:21167172-21167444
-
27.35
100
0
Intron Retention
248
chr2R:21168184-21168431
-
7.7
59.14
0
Intron Retention
553
chr2R:21167043-21167595
-
17.96
89.47
0
Intron Retention
515
chr2R:21165044-21165558
-
7.05
56.7
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000156304 SCAF4 1-to-2
Human hg38 ENSG00000213079 SCAF8 1-to-2
Human hg19 ENSG00000156304 SFRS15 1-to-2
Human hg19 ENSG00000213079 RBM16 1-to-2
Mouse mm10 ENSMUSG00000022983 Scaf4 1-to-2
Mouse mm10 ENSMUSG00000046201 Scaf8 1-to-2
Mouse mm9 ENSMUSG00000022983 Scaf4 1-to-2
Mouse mm9 ENSMUSG00000046201 Scaf8 1-to-2
Rat rn6 ENSRNOG00000002104 Scaf4 1-to-2
Rat rn6 ENSRNOG00000016919 Scaf8 1-to-2
Cow bosTau6 ENSBTAG00000018855 SCAF4 1-to-2
Cow bosTau6 ENSBTAG00000031917 SCAF8 1-to-2
Chicken galGal4 ENSGALG00000013635 SCAF8 1-to-2
Chicken galGal3 ENSGALG00000013635 SCAF8 1-to-2
Zebrafish danRer10 ENSDARG00000018854 scaf4b 1-to-3
Zebrafish danRer10 ENSDARG00000077093 scaf4a 1-to-3
Zebrafish danRer10 ENSDARG00000100056 scaf8 1-to-3