Special

ENSMUSG00000022983 @ mm10

Biotype
protein_coding
Gene Symbol
Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90228957-90284425:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
48.58
82.22
0
Alternative 3'ss
66
chr16:90242653-90242718
-
51.42
82.22
0
Alternative 5'ss
4
chr16:90250057-90250060
-
78.9
90.75
0
Alternative 5'ss
7
chr16:90250054-90250060
-
21.08
90.75
0
Alternative 5'ss
0
NA
-
47.65
76.74
0
Alternative 5'ss
12
chr16:90249627-90249638
-
52.35
76.74
0
Exon Skipping
150
chr16:90257253-90257402
-
97.15
55.76
0
Intron Retention
361
chr16:90247284-90247644
-
12.28
70.83
0
Intron Retention
1632
chr16:90245538-90247169
-
8.96
43.73
0
Intron Retention
153
chr16:90242719-90242871
-
29.03
100
0
Intron Retention
589
chr16:90258122-90258710
-
9.91
55.61
0
Intron Retention
579
chr16:90257403-90257981
-
9.27
70.83
0
Intron Retention
4802
chr16:90252451-90257252
-
6.94
91.19
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000156304 SCAF4 1-to-1
Human hg19 ENSG00000156304 SFRS15 1-to-1
Rat rn6 ENSRNOG00000002104 Scaf4 1-to-1
Cow bosTau6 ENSBTAG00000018855 SCAF4 1-to-1
Chicken galGal4 ENSGALG00000015850 SCAF4 1-to-1
Chicken galGal3 ENSGALG00000015850 SFRS15 1-to-1
Zebrafish danRer10 ENSDARG00000018854 scaf4b 1-to-2
Zebrafish danRer10 ENSDARG00000077093 scaf4a 1-to-2
Fruitfly dm6 FBgn0034598 CG4266 2-to-1