MmuALTD0012413-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022983 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90249639-90250359:-
Coord C1 exon
chr16:90250061-90250359
Coord A exon
chr16:90250054-90250060
Coord C2 exon
chr16:90249639-90249712
Length
7 bp
Sequences
Splice sites
5' ss Seq
GTAGTAGTT
5' ss Score
-7.43
3' ss Seq
TGTTTGTTTTGTTTTTAAAGGAA
3' ss Score
8.98
Exon sequences
Seq C1 exon
CCGGGGATGCCGCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGATGGCTCAGCCTGGGGTTTCTCCAGCTCCACCAGTACAGCCAACTTTCCAATCAACTTTTCAGCCACAAAATGAACCCCATTCACAAAAACCACATCA
Seq A exon
GCAGGTA
Seq C2 exon
GAAATGGAAGTAGAGCAGCCTTGTGTTACAGAGGTTAAGCGGCATGTGCCCGAGAGCAGAAAGTCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022983-16-18,17-18,18-18-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGCTCCACCAGTACAG
R:
CACAAGGCTGCTCTACTTCCA
Band lengths:
105-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types