MmuEX0041107 @ mm10
Exon Skipping
Gene
ENSMUSG00000022983 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90252257-90258121:-
Coord C1 exon
chr16:90257982-90258121
Coord A exon
chr16:90257253-90257402
Coord C2 exon
chr16:90252257-90252450
Length
150 bp
Sequences
Splice sites
3' ss Seq
CAGTTTTCCCATTCTTTAAGCTT
3' ss Score
6.14
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GCTCACCTCCACCCCCAGTAAAAATCTCTTCTGAACTTGCACAAGCTCCCACAAATTCCATGCCTACTGTAGCCCAGCTGCCCAGCTCCGATGCCTTTGCTGCTGTGGCTCAGCTGTTCCAGACAACTCAAGGCCAGCAG
Seq A exon
CTTCAGCAGATCCTTCAGACTTTTCAACAGCCTCCACAACCACAGTCTCCCGCCCTTGACAGTGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAAAGACAGCTCCTACACAGCCACCCGAGCAAAAAACTGCATTTGACAAG
Seq C2 exon
AAGCTGCTTGATAGATTCGATTACGATGACGAGCCAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTTGCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGCCCTCTGCTACCTCTCCCCCTCCTCCACAGACCCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022983_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.545 A=0.872 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTACTGTAGCCCAGCTG
R:
AGGGGGAGAGGTAGCAGAGG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types